Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E02
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 4   LQIRHEAWCRRKVINDAD 57
           +Q R  AWC R ++N  D
Sbjct: 333 MQTRVPAWCDRVLLNPTD 350


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 167 VDQEGCPPYLESWLSHFDSIR 105
           +D + CP Y+ES+  H   +R
Sbjct: 125 MDIQICPIYIESFSYHKQKLR 145


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 248 GASTPSGYCNQRGFDHL 198
           G   P GY   +GF HL
Sbjct: 78  GLEEPKGYTLFKGFVHL 94


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 1   GLQIRHEAWCRRKVINDADFCENPYGKTI 87
           GLQI HE    R V +     E P  +++
Sbjct: 109 GLQINHEDETIRPVFSTLQRAEYPTNRSL 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,109
Number of Sequences: 438
Number of extensions: 1520
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)