Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D24
         (184 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0646 + 5474234-5476189                                           29   0.70 
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110...    27   2.1  
12_02_0434 + 19025539-19026027,19026474-19027553                       26   3.7  
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649...    26   4.9  
11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868     25   6.5  
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    25   6.5  
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293...    25   6.5  
05_03_0631 - 16402182-16402474,16403195-16403468                       25   8.6  
02_02_0713 + 13209130-13209691,13209731-13209850,13209896-132103...    25   8.6  

>12_01_0646 + 5474234-5476189
          Length = 651

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -1

Query: 172 WKLFQHNENCSSDAMMAATVGTLS*ALYSIIPILETFDR*IKIFVPNGHTFIPRPLV 2
           W  F H    + D  M   V  L  + Y ++P L+   R   IF P  H F    LV
Sbjct: 423 WNTFLHEHLDNFDGSMEDVVKVLKLSYYHLVPGLQVCFRYCSIF-PKNHEFKKEELV 478


>06_03_1379 -
           29709532-29709843,29709951-29710112,29710193-29711086,
           29712741-29712812,29714106-29714210,29714820-29714900
          Length = 541

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 126 WRRLWEPYPKLC 91
           WR+LW  YP LC
Sbjct: 111 WRKLWTRYPNLC 122


>12_02_0434 + 19025539-19026027,19026474-19027553
          Length = 522

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 88  SIIPILETFDR*IKIFVPNGHTFIPRP 8
           S I I    DR  ++ +PN HT +P P
Sbjct: 128 SHIDITRRLDRIYRVLLPNDHTPVPSP 154


>06_03_0049 +
           15961706-15962017,15962952-15963851,15964769-15964913,
           15964969-15965705
          Length = 697

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 GFPQSPPSWRRTNNSHYVGTISTRI 180
           G PQSP  WR +++   +G I+ R+
Sbjct: 627 GVPQSPNEWRSSSSRWDLGEITRRM 651


>11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868
          Length = 426

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 126 WRRLWEPYPKL 94
           W+RLW  YPKL
Sbjct: 60  WKRLWRCYPKL 70


>06_01_0844 -
           6411121-6411129,6411671-6411796,6411980-6412043,
           6412568-6412695,6412855-6412971,6414936-6415475,
           6415554-6417344,6418359-6421407,6421765-6421823,
           6422738-6422791
          Length = 1978

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 151 ENCSSDAMMAATVGTLS*AL 92
           E+CSS A +A TVG L+ AL
Sbjct: 363 ESCSSPAQIADTVGALASAL 382


>04_03_0240 -
           13228046-13228170,13228247-13228307,13229301-13229368,
           13229979-13230051,13230130-13230231,13231473-13231592,
           13231795-13231913,13231990-13232047,13232152-13232208,
           13232719-13232851,13233534-13233591,13234592-13234601,
           13239996-13240961
          Length = 649

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 184 DIFAWKLFQHNENCSSDAMMAATVGTL 104
           D   WKL  H E  +S A  A  +GT+
Sbjct: 273 DHIVWKLSNHGEYSASSAYKAQCLGTV 299


>05_03_0631 - 16402182-16402474,16403195-16403468
          Length = 188

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 106 GFPQSPPSWRRTNNSHYVGTISTRI 180
           G P SP  WR +++   +G I+ RI
Sbjct: 141 GVPPSPSEWRSSSSRWDLGEITRRI 165


>02_02_0713 +
           13209130-13209691,13209731-13209850,13209896-13210314,
           13210485-13210750,13211381-13211620,13212084-13212876
          Length = 799

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 106 GFPQSPPSWRRTNNSHYVGTISTRI 180
           G P SP  WR +++   +G I+ R+
Sbjct: 714 GMPPSPSEWRSSSSRRDLGEITRRM 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,624,233
Number of Sequences: 37544
Number of extensions: 90814
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)