Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D24
         (184 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    25   9.4  

>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 12  RGMKVCP---LGTNIFIYLSNVSNIGIIEYKA*DRVPTVAAIMASDEQFSLCWNN 167
           RG K CP     +N    L  ++ I + E  + +  PT+A +  ++EQ+S C+++
Sbjct: 250 RGSKCCPGSITNSNYHACLPALTKI-MNEPISNEINPTIAMVCGANEQYSACFSS 303


>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  KLRIGFPQSPPSWRRTNNS 150
           K+R+G P   PSW+  +NS
Sbjct: 89  KIRLGRPLKRPSWQLRHNS 107


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  KLRIGFPQSPPSWRRTNNS 150
           K+R+G P   PSW+  +NS
Sbjct: 132 KIRLGRPLKRPSWQLRHNS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,735,307
Number of Sequences: 27780
Number of extensions: 76939
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)