Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D23
(253 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 97 2e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 55 2e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 44 3e-06
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 44 3e-06
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 0.66
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 1.2
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 1.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 2.0
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 23 4.7
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 23 4.7
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 23 6.2
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 23 6.2
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 23 6.2
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 23 8.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 23 8.2
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 23 8.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 97.5 bits (232), Expect = 2e-22
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = +3
Query: 81 MREIVHIQAGQCGNQIGAKFWEISSDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 251
MREIVHIQAGQCGNQ+GA FW +DEHG+D G YHG S+ Q ER+NVY+NEA+GG
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGG 57
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 54.8 bits (126), Expect = 2e-09
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +3
Query: 84 REIVHIQAGQCGNQIGAKFWEISSDEHGIDPTGAYHGDSDLQLERINVYYNEA 242
REI+ +QAGQCGNQIG++FW+ EHGI P G + ++R +V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 44.0 bits (99), Expect = 3e-06
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 81 MREIVHIQAGQCGNQIGAKFWEISSDEHGIDPTGAYHGDSDLQLERINVYYNEASG 248
MRE++ + GQ G QIG WE+ EHGI P G +S ++ + N Y N+ G
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFG 54
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 44.0 bits (99), Expect = 3e-06
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +3
Query: 81 MREIVHIQAGQCGNQIGAKFWEISSDEHGIDPTG 182
MREI+ I GQ G QIG WE+ EHGI P G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 0.66
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 167 AVLIGADLPELSSNLVSALSGLDVHDFPHFDIS 69
A++ G+ L L+S L + + + D PHF +S
Sbjct: 44 AIICGSGLGTLASGLSAPVYEVPYEDIPHFHVS 76
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 1.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 120 NQIGAKFWEISSDEHGIDPTGAYHGDSDLQLERI 221
N++G E+ +++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 1.2
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 136 SSGRSAPMSTASTPPVRTTATQTCSWSASMCITM 237
SSG S A PP R T+ + SW TM
Sbjct: 60 SSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTM 93
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 1.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 91 SCTSRPDNAETRLELSSGRSAPMSTASTPPVRTTATQTCSWSASMCITM 237
S +SR + + LSS S P+ TAS+ + T+++ T S +T+
Sbjct: 427 STSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTV 475
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 182 TGGVDAVLIGADLPE-LSSNLVSALSGLDVHDFPH 81
+G + + + DL E L L+SA GL+ H F H
Sbjct: 31 SGKPEFINLSPDLEENLDEKLMSAFPGLEPHVFQH 65
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 23.4 bits (48), Expect = 4.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 99 IQAGQCGNQIGAKFWEISSDEHGIDPTGAYHGDSDLQLERINVYYNEAS 245
I G+ + A + + D I P G Y+ ++ E + +YY A+
Sbjct: 578 ILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNIGKEAVRLYYTHAT 626
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 4.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 100 SRPDNAETRLELSSGRSAPMSTASTPPVRTTATQ 201
S D+ E + SS S P STASTP R Q
Sbjct: 353 SNEDDKE-ECQSSSTSSVPESTASTPKKRILHVQ 385
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 23.0 bits (47), Expect = 6.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 151 APMSTASTPPVRTTATQTCSWSASMCITMRPP 246
+P S+AS PV+ +A S S T PP
Sbjct: 66 SPASSASASPVKKSAEALAERSNSSMGTFDPP 97
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 23.0 bits (47), Expect = 6.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 252 CLRRPHCNTH*CAPAASLSRR 190
C+ PH N H + ASL+ R
Sbjct: 173 CIYNPHLNAHLVSCLASLAER 193
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 23.0 bits (47), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 178 VGSMPCSSELISQN-LAPIWFPHCPAWMC 95
V S S+ I++N + PI CP W+C
Sbjct: 195 VHSNTSSNSGINENAVLPILSSSCPGWIC 223
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 22.6 bits (46), Expect = 8.2
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = +3
Query: 69 RYIKMREIVHIQAGQCGNQIGAKFWEISSDEHGIDPTGAY 188
+Y+ + ++ Q + G + ++ S + +DPTG Y
Sbjct: 283 KYMYIWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKY 322
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/26 (26%), Positives = 21/26 (80%)
Frame = +1
Query: 148 SAPMSTASTPPVRTTATQTCSWSASM 225
S+P++++S+ P+ ++++ ++SAS+
Sbjct: 688 SSPVASSSSSPIPSSSSLVSTYSASL 713
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 22.6 bits (46), Expect = 8.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 192 RGTHRWGRCRAHRS*SPRT*LQSGFRIVRPGCAR 91
RG R G R HRS T LQ+G +V R
Sbjct: 896 RGVKRIGYARLHRSTITDTELQTGKFLVTKDLGR 929
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,006,741
Number of Sequences: 5004
Number of extensions: 16344
Number of successful extensions: 45
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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