Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D23
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.34 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   5.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 0.34
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 208 CKSESPWYAPVGSMPC 161
           CK +  WY P G   C
Sbjct: 234 CKGDGKWYLPSGGCHC 249


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 80  NEGNRAHPGRTMRKPD 127
           NE N   PGR   KP+
Sbjct: 391 NESNITWPGRLQTKPE 406


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 127 LELSSGRSAPMSTASTPPVRTTATQTCS 210
           L  S+  ++PM++  +  VR     TCS
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCS 350


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 88  KSCTSRPDNAETRLELSSGRSAPMSTASTP 177
           +S T +PD   +    SS  SAP S  S+P
Sbjct: 583 ESGTEKPDKPAS----SSASSAPTSVCSSP 608


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 146 LPELSSNLVSALSGLDVHDFPHF 78
           L E +  L  ALS ++   F HF
Sbjct: 870 LVEFALELKKALSSINEQSFNHF 892


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 53  VIYLVQIYQNEGNRAHPGRTMRKPD 127
           V     I++   NRA   R  RKP+
Sbjct: 360 VFLYYNIFKALRNRARKARANRKPN 384


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 94  CTSRPDNAETRLELSSGRSAPMSTASTPPV 183
           C++     E   E+    +AP+    TPP+
Sbjct: 310 CSASNPGGEASAEIRLIVTAPLHVEVTPPL 339


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 94  CTSRPDNAETRLELSSGRSAPMSTASTPPV 183
           C++     E   E+    +AP+    TPP+
Sbjct: 310 CSASNPGGEASAEIRLIVTAPLHVEVTPPL 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,824
Number of Sequences: 438
Number of extensions: 1127
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)