Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D22
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 203 6e-54
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 203 6e-54
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 203 6e-54
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 58 4e-10
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 57 9e-10
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 33 0.013
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 2.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 4.6
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 4.6
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 24 6.1
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 6.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 203 bits (496), Expect = 6e-54
Identities = 90/116 (77%), Positives = 103/116 (88%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNLG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDN+G
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FSVLNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 357
F+V NVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHT
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHT 363
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 203 bits (496), Expect = 6e-54
Identities = 90/116 (77%), Positives = 103/116 (88%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNLG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDN+G
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FSVLNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 357
F+V NVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHT
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHT 363
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 203 bits (496), Expect = 6e-54
Identities = 90/116 (77%), Positives = 103/116 (88%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNLG 189
LQDVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDN+G
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVG 307
Query: 190 FSVLNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 357
F+V NVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHT
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHT 363
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 58.0 bits (134), Expect = 4e-10
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +1
Query: 10 LQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
++DV+ I G GTV GRVE G LK G +V +++ T V +EM + L AV GDN
Sbjct: 257 IEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDN 316
Query: 184 LGFSVLNVSVKELRRGYV 237
G + ++ ++L+RG +
Sbjct: 317 CGLLLRSIKREQLKRGMI 334
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.8 bits (131), Expect = 9e-10
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 25 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNLGFSVL 201
K +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD + V
Sbjct: 476 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 535
Query: 202 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 357
+++ GYV +KN P F AQ+ +L P ++ GY+ V+ HT
Sbjct: 536 GDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHT 585
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 33.1 bits (72), Expect = 0.013
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = -2
Query: 221 NSLTDTFKTLKPRLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 42
N+ + + +T+ + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 41 PIPPILYTSCRP 6
+P +C P
Sbjct: 115 YVPYTSSVACFP 126
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 140 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 24
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 4.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 154 ALQEAVPGDNLGFSVLNVSVKELRRGYVAGDSKNNPPR 267
+LQ+ +P ++ S +NV V E + DS PPR
Sbjct: 1208 SLQDLIPNSSVYISRINVLVTEQSCRRILKDSHFFPPR 1245
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 72 YPKAWYCCRFCPC*HH 119
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 187 GFSVLNVSVKELRRGYVAGDSKNNPPRGAADFTAQ 291
G S++ L +GYV G + + P + FT++
Sbjct: 648 GHSIMQPLAGGLSKGYVPGSTYSGVPMNSEQFTSK 682
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 237 NVTTAQFLDRYV*NAETEIVTGYS 166
++T F+D YV + EIV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,755
Number of Sequences: 5004
Number of extensions: 28236
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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