Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D21
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   0.19 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   1.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   1.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    24   2.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    24   3.2  
SPCC16C4.21 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        23   5.5  

>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 205 TRTTAPIVTPTSLSIIKCHHGGEAACSRFSVGRKSKALEHPYR 77
           T TT+PI   TSLS +     G    S++   +K+K+ E P++
Sbjct: 231 TPTTSPI-NSTSLSFVDAKKPGSKWPSQYDFPKKTKSTEIPFK 272


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 118 KIYYKPLR-RRGGILLSIKMS 177
           K+YY+PLR R+ G ++ I+ S
Sbjct: 403 KLYYQPLRDRKAGTMMEIQFS 423


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 9   TWFVRAGLGKLRDGDEAGALACNRYGCSRALLL 107
           T +  AG+GK      +G L   RYGCS   LL
Sbjct: 389 TVYATAGIGK------SGCLVTMRYGCSSTTLL 415


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 40  CATATRPELWLATDTDAPGLY 102
           CA     E WL+TD   P  Y
Sbjct: 362 CAPTPEDECWLSTDCKVPTCY 382


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 55  RPELWLATDTDAPGLYSYGRPKIYYKPLRR 144
           +PEL++A D +AP +    RP I+Y  L +
Sbjct: 410 QPELYMAIDANAPLIL---RPLIFYYNLNQ 436


>SPCC16C4.21 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 81

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 LRPTENLLQAASPPWWHFIIDKDVGVTI 188
           LR +E  +  A+P   HF++  D GV +
Sbjct: 11  LRYSECCILTANPSVQHFVMHDDAGVPL 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,486
Number of Sequences: 5004
Number of extensions: 9536
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)