Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D21
         (207 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-10|CAA85459.1|  280|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z37092-10|CAA85459.1|  280|Caenorhabditis elegans Hypothetical
           protein F44F4.10 protein.
          Length = 280

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 205 TRTTAPIVTPTSLSIIKCHHGGEAA 131
           T  + P+ T +  S +KCHH  + A
Sbjct: 143 TNFSGPVTTESLESNVKCHHASQTA 167


>Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical
           protein F35G2.1b protein.
          Length = 433

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 205 TRTTAPIVTPTSLSIIKCH 149
           T T AP+ T T+  +I CH
Sbjct: 127 TTTLAPVTTTTNTPLIDCH 145


>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 205 TRTTAPIVTPTSLSIIKCH 149
           T T AP+ T T+  +I CH
Sbjct: 295 TTTLAPVTTTTNTPLIDCH 313


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical protein
            F54G8.3 protein.
          Length = 1139

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 144  PWWHFIIDKDVGVTIGAVVLV 206
            PWW ++I   +GV I +++++
Sbjct: 1084 PWWIYVIAAVIGVLILSLIII 1104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,099,378
Number of Sequences: 27780
Number of extensions: 58046
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)