Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D20
(262 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 87 4e-19
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 82 1e-17
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 78 2e-16
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.10
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 0.18
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 1.7
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 24 2.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 2.9
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 24 3.8
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 24 3.8
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 24 3.8
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 23 6.7
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 23 8.8
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 23 8.8
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 23 8.8
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 87.0 bits (206), Expect = 4e-19
Identities = 39/65 (60%), Positives = 56/65 (86%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEALRG 213
M+Y+AAYLL +GGK SP+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI A
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 214 KLSSM 228
KLS++
Sbjct: 61 KLSTV 65
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 82.2 bits (194), Expect = 1e-17
Identities = 36/65 (55%), Positives = 56/65 (86%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEALRG 213
M+Y+AAYLL +GGK SP+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI A
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 214 KLSSM 228
KL+++
Sbjct: 61 KLATV 65
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 78.2 bits (184), Expect = 2e-16
Identities = 34/65 (52%), Positives = 55/65 (84%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEALRG 213
M+Y+AAYLL +GGK SP+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI A
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 214 KLSSM 228
KL+++
Sbjct: 61 KLATV 65
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 0.10
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 103 EKILSSVGIEADSEKLKKVISELNGKNVEELI 198
E +L S G+E S+ KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 0.18
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 100 VEKILSSVGIEADSEKLKKVISELNGKNVEELIEALRGKLSS 225
V++I VG+E DSE K + E+ G + E + ++SS
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKGNKSYDSYEIV-ARISS 1782
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 1.7
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 82 SPAAADVEKILS--SVGIEADSEKLKKVISELNGKNVEELIEALRGKLS 222
SP++ + ++ + G DSEK+K + + K+ ++ E GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 2.9
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 103 EKILSSV---GIEADSEKL-KKVISELNGKNVEELIEALRGK 216
E+++S+V +E+ KL KK+I E+N KN + + E + K
Sbjct: 615 ERLMSTVELLSLESGENKLIKKLIIEINQKNYDFIDEFFKTK 656
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.2 bits (50), Expect = 2.9
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +1
Query: 97 DVEKILSSVG-IEADSEKLKKVI--SELNGKNVEELIEALRGK 216
DV+ + ++ ++ D K ++ + S+L KN+ E+I+ L+GK
Sbjct: 683 DVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGK 725
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 23.8 bits (49), Expect = 3.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 151 KKVISELNGKNVEELIEALR 210
K ++ + GKN+++ IEALR
Sbjct: 35 KIILKKPKGKNIKDYIEALR 54
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 23.8 bits (49), Expect = 3.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 97 DVEKILSSVGIEADSEKLKKVISELNGKNVEELIEALRGKLSS 225
DV++ LS + EA + NG+ +EE++ A KL +
Sbjct: 56 DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 23.8 bits (49), Expect = 3.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 76 KASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEALRGKL 219
+ P A + + +L DS+ V+S K+ +ELI+A++ L
Sbjct: 131 EVKPYAVNWDNVLKEEEEGKDSQDDPSVLSHKRNKSSKELIDAMQWPL 178
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 23.0 bits (47), Expect = 6.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 76 KASPAAADVEKILSSV--GIEADSEKLKKVISELNGKNVEELIEALRGK 216
+ +P V++ +SV +EA + K+ S L G EEL +LR K
Sbjct: 31 ETTPRETSVDEDNTSVFEDVEAQDSRQKRFSSTLEGNRFEEL-RSLREK 78
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 139 SEKLKKVISELNGKNVEELIE 201
SE ++ V+ ELN KN+E ++
Sbjct: 24 SEIIEHVLEELNLKNIERRVK 44
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 125 PTELRIFSTSAAAGDALPPNTA 60
P ++ S+ + AG ALP NT+
Sbjct: 438 PPRSKLISSKSEAGRALPGNTS 459
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 64 VLGGKASPAAADVE 105
V GG A+PAAAD E
Sbjct: 71 VAGGAAAPAAADGE 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,576
Number of Sequences: 5004
Number of extensions: 13361
Number of successful extensions: 42
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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