Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D19
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    56   5e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    39   1e-04
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    39   1e-04
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    38   2e-04
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    28   0.19 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   3.1  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    24   3.1  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   3.1  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    24   3.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    23   4.1  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    23   7.2  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    23   7.2  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    22   9.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    22   9.5  

>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 56.4 bits (130), Expect = 5e-10
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +1

Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTPIILAENKIGD 225
           IV DN TGFVK G+A  NFP F FPS+VG PI+ AE K G+
Sbjct: 6   IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGN 46


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = +1

Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGT 192
           I+ DN TG+ K G+AG++ P+++FP+++ T
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT 37


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
           +V DN +G  K GFAG + P  +FPS+VG P
Sbjct: 8   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVG 189
           I  DN +GF+K GFAG + P  +FP+ VG
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVG 40


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 181 LKGK*TLGNCCRRNHISQSQFSYHKLSLFFLYHPF*LSEVNYN 53
           L G   LGN C  N   Q     H+L+ +FL   +   ++NYN
Sbjct: 278 LCGLYNLGNSCYMNSALQCMIHTHELTKYFLSDSY-EKDINYN 319


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 153 AAGETTFHKASSVITNYHFSSFITPFNYLK 64
           + G+T   K +   TN ++SS + P  Y+K
Sbjct: 545 STGKTEVAKRAQFPTNVNYSSCVDPRTYVK 574


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 150 AGETTFHKASSVITNYHF--SSFITPFNYLK*ITIIYTMT 37
           +G +  + A   I    F  S FITPF  L  + +++T+T
Sbjct: 158 SGTSILYTAGDHIRKLDFKDSGFITPFFQLLLLVLLFTLT 197


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 224 SPILFSANMIGVPTIEGKINAGKLLPA 144
           SP  F +  IG+ T+   I++GK  P+
Sbjct: 534 SPKPFLSRQIGISTLSSNISSGKGTPS 560


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 162 WEIAAGETTFHKASSVITNYHFSSFI 85
           +++   ET F +++S +T  H SSFI
Sbjct: 25  YKMPPNETLFLESTSKLTQDHISSFI 50


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 145 RNHISQSQFSYHKLSLFF 92
           RNH S SQ +Y  LSL +
Sbjct: 417 RNHSSHSQGNYDPLSLIY 434


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 174 ENKR--WEIAAGETTFHKASSVITNY 103
           E+KR  W I  G  +FH    ++T++
Sbjct: 99  ESKRSPWGIWVGNLSFHTTKEILTDF 124


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  SINNCNLLQIIKRGDKGRKVIVCDN*TGFVKCGFAGS 153
           S+N+ +LL  I     GR+ +     T F++ GF GS
Sbjct: 410 SLNDHSLLNYIDTAFGGREYLKKTILTDFMRFGFDGS 446


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 94  FLYHPF*LSEVNYNYLY 44
           + +HPF + E + N+LY
Sbjct: 265 YYFHPFTVLETDENFLY 281


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 187 GTPIILAENKIGD 225
           GTPI+ + N IGD
Sbjct: 257 GTPILASSNPIGD 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,933
Number of Sequences: 5004
Number of extensions: 14508
Number of successful extensions: 42
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)