Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D19
(226 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 73 2e-14
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 39 6e-04
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 39 6e-04
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 39 6e-04
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 39 6e-04
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 39 6e-04
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 39 6e-04
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 39 6e-04
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 39 6e-04
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 39 6e-04
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 39 6e-04
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 39 6e-04
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 39 6e-04
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 38 7e-04
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 34 0.012
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 33 0.036
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 30 0.25
U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical pr... 25 7.2
AC024763-2|AAK68885.2| 411|Caenorhabditis elegans Hypothetical ... 25 7.2
AC024763-1|AAK68886.1| 411|Caenorhabditis elegans Hypothetical ... 25 7.2
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 73.3 bits (172), Expect = 2e-14
Identities = 31/46 (67%), Positives = 39/46 (84%)
Frame = +1
Query: 88 KGRKVIVCDN*TGFVKCGFAGSNFPAFIFPSMVGTPIILAENKIGD 225
+GRKVIV DN TGFVKCG+AG+NFPA IFPSMVG PI+ + ++G+
Sbjct: 4 QGRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGN 49
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 38.3 bits (85), Expect = 7e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
++ DN +G K GFAG + P +FPS+VG P
Sbjct: 9 LILDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 34.3 bits (75), Expect = 0.012
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 106 VCDN*TGFVKCGFAGSNFPAFIFPSMV 186
V DN TG+ K G+AG+ P FI PS +
Sbjct: 10 VIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 32.7 bits (71), Expect = 0.036
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 103 IVCDN*TGFVKCGFAGSNFPAFIFPSMVGTP 195
+V DN +G +K GFAG P F + VG P
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRP 41
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 29.9 bits (64), Expect = 0.25
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 133 KCGFAGSNFPAFIFPSMVGTP 195
+ GFAG + P +FPS+VG P
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRP 25
>U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical
protein F35D2.4 protein.
Length = 747
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 22 QDFE*SHSINNCNLLQIIKR 81
Q+FE S+N C LL+ IKR
Sbjct: 179 QNFESGSSLNACGLLENIKR 198
>AC024763-2|AAK68885.2| 411|Caenorhabditis elegans Hypothetical
protein Y39A3CL.4a protein.
Length = 411
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 132 EMWFRRQQFPSVYFP 176
+MW+ + P+VYFP
Sbjct: 192 QMWYLQSSLPAVYFP 206
>AC024763-1|AAK68886.1| 411|Caenorhabditis elegans Hypothetical
protein Y39A3CL.4b protein.
Length = 411
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 132 EMWFRRQQFPSVYFP 176
+MW+ + P+VYFP
Sbjct: 192 QMWYLQSSLPAVYFP 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,844,544
Number of Sequences: 27780
Number of extensions: 78113
Number of successful extensions: 166
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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