Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D18
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    90   4e-20
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   1.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   7.1  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    23   7.1  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     22   9.4  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    22   9.4  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    22   9.4  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    22   9.4  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 89.8 bits (213), Expect = 4e-20
 Identities = 44/54 (81%), Positives = 46/54 (85%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ V
Sbjct: 7   ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDV 60


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 91  GWLLRCGGAC 120
           GWL  CGGAC
Sbjct: 70  GWLHNCGGAC 79


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 79  PREELIELRLKNSITDEFSFFGNVPL 2
           PR+  +   L++S+ DE+ FF + PL
Sbjct: 700 PRDLDLFACLQHSLFDEYRFFPDYPL 725


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 121 DTHLHTGVAILGQLPREELIELRLKNSITDEFSF 20
           D +L T V  L +LP EEL+  +  NS+    SF
Sbjct: 673 DVYLPT-VESLQKLPAEELMRQKEINSLKTTMSF 705


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 129 YVQKSLLWPQGR 164
           Y+Q+++LW QG+
Sbjct: 304 YIQQTILWTQGQ 315


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 109 HTGVAILGQLPRE-ELIELRLKNSIT 35
           H G AI+  LP+E E I L LK+S++
Sbjct: 542 HNGAAIMFLLPKESEYINL-LKSSVS 566


>SPAC637.11 |suv3||ATP-dependent RNA helicase
          Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 5  RNISKKRKFVGDGVFKAELNEF 70
          +++ ++RKF G+ ++ A LN F
Sbjct: 28 KDVFQQRKFPGNTLWAAALNRF 49


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 39  SPTNFRFLEMFLC 1
           SP+N+RF+E   C
Sbjct: 301 SPSNYRFIESVTC 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,347
Number of Sequences: 5004
Number of extensions: 9802
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)