Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D18
(173 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 96 4e-21
10_08_0211 + 15899017-15901392 29 0.70
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 26 3.7
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685... 26 3.7
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 26 3.7
04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141 26 3.7
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812... 26 4.9
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 25 6.5
04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482... 25 6.5
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 25 8.6
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 95.9 bits (228), Expect = 4e-21
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = +2
Query: 11 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+V
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNV 60
>10_08_0211 + 15899017-15901392
Length = 791
Score = 28.7 bits (61), Expect = 0.70
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 99 TPVWRCVSHPYVQKSLLWPQ 158
T +W +SH +Q+S LWPQ
Sbjct: 696 TQIWAILSHCNIQESNLWPQ 715
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 84 WPRMAT-PVWRCVSHPYVQKSLLWPQGRRAC 173
WPR+ P W C SH ++ L RR C
Sbjct: 14 WPRLPRLPPWPCASHAQRRRVLRLLPPRRRC 44
>06_03_0311 +
19466258-19466303,19466496-19467087,19468059-19468524,
19470028-19470081,19470112-19470226,19470499-19470605
Length = 459
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 171 TLCVLVAIIMISERMGVTR 115
+LCVL+ I++ISE +GV R
Sbjct: 4 SLCVLLCILVISEVVGVPR 22
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 87 PRMATPVWRCVSHPYVQKSLLW 152
P+ TP W V YV+KS+LW
Sbjct: 244 PKGKTP-WEDVKREYVRKSILW 264
>04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141
Length = 129
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 163 RPCGHNNDF*TYGCDTHLHTGVAILGQLPREELIELRLKNSITD 32
R GHN+ YG +TH ++GV G+ + E +L S TD
Sbjct: 60 RTDGHNHA--AYGANTHSNSGVMNKGENSGADSNERKLMVSTTD 101
>05_05_0387 +
24577448-24577638,24580375-24580767,24581078-24581208,
24581460-24581899
Length = 384
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Frame = -2
Query: 130 YGCD---THLHTGVAILGQLPREE------LIE-LRLKNSITDEFSFFGNVP 5
YG D H+H + + +P E LIE +LKN + +FS G+ P
Sbjct: 258 YGIDPSEVHIHVKIIQVSDIPTSEDEVADWLIERFKLKNKLLSDFSALGHFP 309
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 97 AILGQLPREELIELRLKNSITDE 29
A +G +PRE L KNSITD+
Sbjct: 24 APIGCIPRERDALLEFKNSITDD 46
>04_03_0746 +
19247529-19247723,19247808-19248000,19248145-19248230,
19248861-19249028,19249445-19249738
Length = 311
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 8 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEI 142
+++ RK + A L E L ELA DG + EV + SEI
Sbjct: 150 DVNHFRKLMASKAAAANLYETLRMELAGDGIAITEVIPGVVESEI 194
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 109 GGACHTHTFRNHYYGHK 159
GG HTH +NH + H+
Sbjct: 46 GGHSHTHDHQNHNHSHE 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,929,981
Number of Sequences: 37544
Number of extensions: 85152
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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