Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D18
         (173 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55715-1|CAA39248.1|  243|Homo sapiens protein ( Human Hums3 mRN...   101   4e-22
U14992-1|AAB60338.1|  243|Homo sapiens ribosomal protein S3 prot...   101   4e-22
U14991-1|AAB60337.1|  243|Homo sapiens ribosomal protein S3 prot...   101   4e-22
U14990-1|AAB60336.1|  243|Homo sapiens ribosomal protein S3 prot...   101   4e-22
L16016-1|AAA18095.1|   95|Homo sapiens ribosomal protein S3 prot...   101   4e-22
BC100284-1|AAI00285.1|  243|Homo sapiens ribosomal protein S3 pr...   101   4e-22
BC071917-1|AAH71917.1|  243|Homo sapiens ribosomal protein S3 pr...   101   4e-22
BC071669-1|AAH71669.1|  117|Homo sapiens RPS3 protein protein.        101   4e-22
BC034149-1|AAH34149.1|  243|Homo sapiens ribosomal protein S3 pr...   101   4e-22
BC013196-1|AAH13196.1|  242|Homo sapiens Unknown (protein for IM...   101   4e-22
BC003577-1|AAH03577.1|  242|Homo sapiens Unknown (protein for IM...   101   4e-22
BC003137-1|AAH03137.1|  243|Homo sapiens ribosomal protein S3 pr...   101   4e-22
AY791291-1|AAV40835.1|  243|Homo sapiens ribosomal protein S3 pr...   101   4e-22
AK223048-1|BAD96768.1|  243|Homo sapiens ribosomal protein S3 va...   101   4e-22
AB061838-1|BAB79476.1|  243|Homo sapiens ribosomal protein S3 pr...   101   4e-22
S42658-1|AAB19349.2|  243|Homo sapiens S3 ribosomal protein prot...   100   1e-21

>X55715-1|CAA39248.1|  243|Homo sapiens protein ( Human Hums3 mRNA
           for 40S ribosomal protein s3. ).
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>U14992-1|AAB60338.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>U14991-1|AAB60337.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>U14990-1|AAB60336.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>L16016-1|AAA18095.1|   95|Homo sapiens ribosomal protein S3
           protein.
          Length = 95

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>BC100284-1|AAI00285.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>BC071917-1|AAH71917.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>BC071669-1|AAH71669.1|  117|Homo sapiens RPS3 protein protein.
          Length = 117

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>BC034149-1|AAH34149.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>BC013196-1|AAH13196.1|  242|Homo sapiens Unknown (protein for
           IMAGE:4347401) protein.
          Length = 242

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 4   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 57


>BC003577-1|AAH03577.1|  242|Homo sapiens Unknown (protein for
           IMAGE:3544292) protein.
          Length = 242

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 4   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 57


>BC003137-1|AAH03137.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>AY791291-1|AAV40835.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>AK223048-1|BAD96768.1|  243|Homo sapiens ribosomal protein S3
           variant protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>AB061838-1|BAB79476.1|  243|Homo sapiens ribosomal protein S3
           protein.
          Length = 243

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


>S42658-1|AAB19349.2|  243|Homo sapiens S3 ribosomal protein
           protein.
          Length = 243

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/54 (87%), Positives = 52/54 (96%)
 Frame = +2

Query: 11  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 172
           ISK+RKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+V
Sbjct: 5   ISKRRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNV 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,224,149
Number of Sequences: 237096
Number of extensions: 380211
Number of successful extensions: 729
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)