Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D18
         (173 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   1.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   7.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    18   9.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    18   9.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 100 LRCGGACHTHTFRNHY 147
           LR GG  H H  + HY
Sbjct: 13  LRNGGVEHPHQHQQHY 28


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -2

Query: 31 EFSFFGNV 8
          E+SF+GN+
Sbjct: 5  EYSFYGNI 12


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 82  LPREELIELRLKNSI 38
           L   +LIE+ LKN +
Sbjct: 65  LKLSQLIEMNLKNQV 79


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = +1

Query: 112 GACHTHTFRNHYYGH 156
           G  H H   +H++ H
Sbjct: 422 GHSHIHATPHHHHSH 436


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 94  WLLRCGGACH 123
           + L CG +CH
Sbjct: 35  YCLGCGDSCH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,103
Number of Sequences: 438
Number of extensions: 727
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)