Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D17
(236 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 129 4e-32
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 129 4e-32
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 129 4e-32
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 129 4e-32
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 129 4e-32
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 77 2e-16
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 1e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 40 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.001
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.020
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 1.3
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 1.8
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 1.8
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 1.8
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 2.3
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 23 4.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 23 5.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 5.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 23 5.4
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 23 5.4
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 23 7.1
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 23 7.1
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 22 9.4
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 220 IQKES 234
IQKES
Sbjct: 61 IQKES 65
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 220 IQKES 234
IQKES
Sbjct: 61 IQKES 65
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 220 IQKES 234
IQKES
Sbjct: 61 IQKES 65
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 220 IQKES 234
IQKES
Sbjct: 61 IQKES 65
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 220 IQKES 234
IQKES
Sbjct: 137 IQKES 141
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 220 IQKES 234
IQKES
Sbjct: 213 IQKES 217
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 220 IQKES 234
IQKES
Sbjct: 289 IQKES 293
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 220 IQKES 234
IQKES
Sbjct: 365 IQKES 369
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 129 bits (312), Expect = 4e-32
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 220 IQKES 234
IQKES
Sbjct: 61 IQKES 65
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 77.4 bits (182), Expect = 2e-16
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 219
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 220 IQ 225
++
Sbjct: 61 LE 62
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 1e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 40 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 216
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 217 NIQKE 231
NI+++
Sbjct: 61 NIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.3 bits (90), Expect = 3e-05
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 67 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 225
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIK 62
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.5 bits (78), Expect = 0.001
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 34 STMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 213
+ + + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 214 YNIQ 225
Y IQ
Sbjct: 62 YKIQ 65
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 31.1 bits (67), Expect = 0.020
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2
Query: 199 DHLPTVYRRRSIFVDQEGCPPYLESWLS 116
DHLP+V RRRSI D G P Y + LS
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDYNKRSLS 638
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 202 FDHLPTVYRRRSIFVDQEGCPPYLESWLSHFR*YQRVRP 86
FDH+ + + + + ++D P L+ +LS F Y P
Sbjct: 556 FDHIDSSFVQLATYIDTSMIPSSLKPYLSVFAKYIEAAP 594
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 229 PSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPY 134
PS + RG + P+ RRR + G PY
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGFHPY 48
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 1.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 34 STMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 213
S +I V T+ K +V + T+ +K I P D+ +LI AG+ L + L +
Sbjct: 2 SEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 49 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 144
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 109 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 228
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 21 RRKVINDADFCENP 62
RR V+N CENP
Sbjct: 49 RRAVLNQTSLCENP 62
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 186 LFTGEDQSLLIRRDAL 139
+FT EDQ LIR AL
Sbjct: 123 IFTREDQEFLIRNKAL 138
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 151 PDQQRLIFAGKQLEDGRTLSDYNI 222
P+Q AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/36 (25%), Positives = 16/36 (44%)
Frame = -2
Query: 217 CNQRGFDHLPTVYRRRSIFVDQEGCPPYLESWLSHF 110
CN++G + V R V+Q+ +W+ F
Sbjct: 277 CNKKGLSYFKAVIRAFEWLVEQKLSKTRFSAWMHSF 312
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 157 DQEGCPPYLESWLSHFR 107
DQEG P YLES H R
Sbjct: 159 DQEGLPIYLESSHLHNR 175
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 128 ILAFTFSIVSEGSTSRVMVFPVRVFT 51
ILAF F G+T V V PV F+
Sbjct: 182 ILAFGFVNSFSGATDTVRVLPVSQFS 207
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 9 VAWCRRKVINDADFCENPY 65
VA C R ++N C N Y
Sbjct: 88 VAMCLRAILNIVTICSNSY 106
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 88 VEPSDTIENVKAKIQDKEG 144
++ + T+E VK K++DK+G
Sbjct: 503 LDGNPTLELVKKKVRDKKG 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,395
Number of Sequences: 5004
Number of extensions: 20175
Number of successful extensions: 66
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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