Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D17
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.041
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   2.0  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   4.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   6.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   6.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   6.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   6.2  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              19   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.041
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 207
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = +3

Query: 3   TRV-AWCRRKVINDAD 47
           TRV AWC R ++N  D
Sbjct: 335 TRVPAWCDRVLLNPTD 350


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 85  EVEPSDTIENVKAKIQDKE 141
           E+EP DT++ +  + + +E
Sbjct: 20  ELEPEDTMDYIPTRFRRQE 38


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 160 VDQEGCPPYLESWLSH 113
           +D + CP Y+ES+  H
Sbjct: 125 MDIQICPIYIESFSYH 140


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 236 VDSFWIL*SERVRPSSNCLPAKINL 162
           +DSF +   +RVRP+    P ++ +
Sbjct: 16  LDSFSVSYDKRVRPNYGGPPVEVGV 40


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 236 VDSFWIL*SERVRPSSNCLPAKINL 162
           +DSF +   +RVRP+    P ++ +
Sbjct: 16  LDSFSVSYDKRVRPNYGGPPVEVGV 40


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -1

Query: 80  VMVFPVRVFTKICIVDY 30
           +   P  ++TK+ +V+Y
Sbjct: 171 ISAIPFAIYTKVNLVEY 187


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 212 SERVRPSSNCLPAKINLC*SGG 147
           +E+V+  S CL  K N    GG
Sbjct: 56  NEKVQLFSECLIKKFNAYDDGG 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,332
Number of Sequences: 438
Number of extensions: 1370
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)