Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D16
(204 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 1.0
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 1.0
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 25 1.4
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 1.4
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 24 3.2
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 23 4.2
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 23 4.2
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 23 4.2
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 23 5.5
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 23 5.5
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 22 9.7
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 119 WAKTAIFTAAYSDDIFLWTRIKYGFN 42
WA T + + D IF TR++ FN
Sbjct: 323 WASTELLWSCSKDGIFSQTRVENAFN 348
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 184 YVWPGHVLVLSKLKKFTKNQKNGQKL 107
Y W G + +L + F K++KN KL
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKL 189
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 149 IEKIYQKPKKWAKTAIFTAAYSDDIFLWTRIKY 51
I KI+ K WA I T +++TRI++
Sbjct: 185 IVKIFTSRKVWAALTIITVITLSSGYMFTRIRF 217
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 149 IEKIYQKPKKWAKTAIFTAAYS 84
++ IY KP W + A+ T A S
Sbjct: 300 VQPIYSKPSYWKRIALITPANS 321
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 23.8 bits (49), Expect = 3.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = -2
Query: 125 KKWAKTAIFTAAYSDDIFLWTRI 57
+KW K +F A ++ W R+
Sbjct: 45 RKWMKRFVFVGAAGIGVYAWDRV 67
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/33 (24%), Positives = 16/33 (48%)
Frame = -3
Query: 172 GHVLVLSKLKKFTKNQKNGQKLQFLQLLTAMIF 74
GH +K FTK + ++L+ + ++ F
Sbjct: 145 GHATFAEMVKAFTKIENTSKRLEIIDIMGTYFF 177
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 110 FLPIFLVFGKFFQFTQNEDVTGPNVS 187
FLP+FL+ FF ++E T P+++
Sbjct: 167 FLPLFLLIMYFFVLPESES-TSPSIN 191
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 36 EIIKTILDPSPQKNIIAVSSCKNC 107
E++ +L S KN+ +S+C +C
Sbjct: 93 EVVNMLLVASSSKNLEVLSACVDC 116
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 174 PVTSSF*VN*KNLPKTKKMGKNCN 103
P S+ N KNL K KKM K C+
Sbjct: 352 PPASTSNSNKKNLDKLKKMRKLCS 375
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 125 KKWAKTAIFTAAYSDDIFLWTRIKYGF-NYFVEQLNLKIC 9
++W K ++ + +S DI+ + +G +Y L++ +C
Sbjct: 376 QRWKKASLKQSKFSSDIYATYTLSHGGPSYIWWALHISVC 415
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 98 TAAYSDDIFLWTRIKYGFNYFVEQLNL 18
TAAY++DI + K YF NL
Sbjct: 284 TAAYNNDITKYLVQKQDIGYFEPHTNL 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,979
Number of Sequences: 5004
Number of extensions: 12336
Number of successful extensions: 35
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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