Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D16
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0752 - 20315656-20315834,20315923-20315971,20316201-203162...    28   1.2  
12_01_0110 + 855275-855493,856235-856363,856687-856864,857070-85...    25   8.4  

>10_08_0752 -
           20315656-20315834,20315923-20315971,20316201-20316230,
           20317325-20317501,20319012-20319277,20319367-20319715
          Length = 349

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 146 EKIYQKPKKWAKTAIFTAAYSDDIFL 69
           E+++ +P +WAKTA F  A    + L
Sbjct: 24  ERVWARPWRWAKTAFFVVAMIASLLL 49


>12_01_0110 +
           855275-855493,856235-856363,856687-856864,857070-857128
          Length = 194

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 197 EFELIRLARSRPRFE*I-EKIYQKPKKWAKTAIFTAAYSDDIFLWTRIKYGF 45
           EF+  RL++  P  E +   +  +P  W  TAI TA++  D     RIK  F
Sbjct: 103 EFQRERLSQQSPEEESVLASMLMRP--WPVTAISTASFEGDDERLNRIKRVF 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,651,815
Number of Sequences: 37544
Number of extensions: 65726
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)