Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D15
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   1.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    24   3.2  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    23   4.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    23   5.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    22   9.6  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 126  VLCSLF*TFNQNYWLQSSIKGYGRY 52
            V+C L    NQN+W+ + I    R+
Sbjct: 1157 VICFLISVINQNFWMSTLISQAWRF 1181


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 132 ICVLCSLF*TFNQNYWLQSSIK 67
           IC L  +  TF+ +YW Q  ++
Sbjct: 5   ICTLTCILPTFSMDYWNQECVE 26


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 51  CNAHNPLYSIGASSFD*RFKKVNTIHI 131
           C+A N + S+  SSF     KV   HI
Sbjct: 77  CSADNAIASLNGSSFQGNTLKVEYTHI 103


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 97  SKLLAPIEYKGLWALHRNIR 38
           SK +AP+ Y  +WA   N R
Sbjct: 752 SKTVAPLRYVKIWANTENAR 771


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 72  IKGYGRYTEI 43
           ++GYGRYT++
Sbjct: 636 VEGYGRYTDV 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,357
Number of Sequences: 5004
Number of extensions: 8497
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)