Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D15
         (138 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   5.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   7.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    18   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                18   9.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 81  QSSIKGYGRYTEIFVNFGNED 19
           +  +K    YT I V+  NED
Sbjct: 299 KEQVKEDSLYTNIVVDIRNED 319


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 87  WLQSSIKGYGRYTEIFVNFG 28
           WL+ + + +G   E+   FG
Sbjct: 232 WLRDNAEAFGGDPELITIFG 251


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 87  WLQSSIKGYGRYTEIFVNFG 28
           WL+ + + +G   E+   FG
Sbjct: 232 WLRDNAEAFGGDPELITIFG 251


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 43  IR*FWERRCVHPS 5
           ++ FWERR +  S
Sbjct: 151 VKEFWERRALQIS 163


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 64  LWALHRN 44
           LW LH+N
Sbjct: 499 LWGLHKN 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,532
Number of Sequences: 438
Number of extensions: 566
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)