Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D13
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    29   0.35 
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    24   7.6  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    24   10.0 

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 208 NGGRNPQ-PGCWVSTCSHSRAYEVFASTVRTNHLQGRLCSNINQAQNNRCTGSTLNMGNA 384
           N G NP+ P  + S   +   + V ++ V  +       S+INQ   N   GST+++ N 
Sbjct: 249 NSGLNPRSPNSFSSPLDNPALHTVDSTNVNGSLSPLSNSSSINQVHQNETHGSTISVPNP 308

Query: 385 VLSK 396
            LS+
Sbjct: 309 NLSQ 312


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 156 ISVDSFNVLSRL--LIQSKIISSPPWSSRVK 70
           IS+D  + LS L  LIQSK +S   WSS  K
Sbjct: 55  ISLDGGSHLSALVELIQSKHLSVDSWSSITK 85


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 78  CWTKVGRK 101
           CWTK+GRK
Sbjct: 334 CWTKIGRK 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,056
Number of Sequences: 5004
Number of extensions: 32446
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)