Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D13
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    28   2.1  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   3.7  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine rece...    26   8.7  
U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine rece...    26   8.7  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 226  QPGCWVSTCSHSRAYEVFASTVRTN 300
            Q G  VSTCSHS  YE + S    N
Sbjct: 1199 QYGVDVSTCSHSMHYECYRSLAEAN 1223


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 214  GRNPQPGCWVSTCSHSRAYEVFAS-TVR-TNHLQGRLCSNINQAQNNRC 354
            G    P C  STC H    E F   T R ++   G+LC  ++  ++  C
Sbjct: 940  GAVSDPMCSSSTCKHGECSETFNDFTCRCSDGSTGKLCDKVDYCKDASC 988


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 256 ESKC*PSNRVADSYHRSD--KSHRERCGQRYRVSH 158
           +S C   + V     RS   ++HRERC + YR+ H
Sbjct: 529 QSSCYVFHSVTSICFRSQAGRAHRERCLEYYRICH 563


>U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform a protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 398 RLDKTALPMFKVLPVHRL--F*AWFMLEQS 315
           R+ K ALP+  +LP H    F  WFM+  S
Sbjct: 132 RIVKWALPLIGILPTHAWPGFTYWFMITSS 161


>U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform b protein.
          Length = 337

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 398 RLDKTALPMFKVLPVHRL--F*AWFMLEQS 315
           R+ K ALP+  +LP H    F  WFM+  S
Sbjct: 136 RIVKWALPLIGILPTHAWPGFTYWFMITSS 165


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 145 IHTDGGLLGIFDRIAHGDFYPNGGRN 222
           +HTDGG  G  D   H D + +GG +
Sbjct: 37  VHTDGGHHGHMDTHHHHDSHHHGGHH 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,440,685
Number of Sequences: 27780
Number of extensions: 203281
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)