Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D12
(283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 0.51
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 0.51
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 2.1
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 2.7
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom... 24 3.6
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 24 3.6
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 24 3.6
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 24 3.6
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 24 4.7
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 24 4.7
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 24 4.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 6.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 6.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 23 8.3
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.1 bits (57), Expect = 0.51
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 252 FVFLQMFRALGPNGTRST-PSNIFPGR 175
FV Q+F GPN T P+ +FP R
Sbjct: 453 FVIAQLFSNFGPNSTTFIYPAEVFPAR 479
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.1 bits (57), Expect = 0.51
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 252 FVFLQMFRALGPNGTRST-PSNIFPGR 175
FV Q+F GPN T P+ +FP R
Sbjct: 454 FVIAQLFSNFGPNSTTFIYPAEVFPAR 480
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 11 IRHEGDACARRHSNNRVLVRLARALSIFKNITTCTKYIT 127
IRH+G C + L +LA+ ++ N++ TK+ T
Sbjct: 171 IRHDGQVCNITIAAEETLRQLAQQVAEKMNVSPPTKFTT 209
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 2.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 231 RALGPNGTRSTPSNIFPGRE 172
R G G +TPS + PGR+
Sbjct: 185 RTPGSTGQNTTPSRVLPGRK 204
>SPAP11E10.01 |||ornithine cyclodeaminase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 330
Score = 24.2 bits (50), Expect = 3.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 26 DACARRHSNNRVLVRLARALSIFKNI 103
D C +HS L A A+++FK++
Sbjct: 284 DLCNNKHSGRSQLKNPAEAITLFKSV 309
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 24.2 bits (50), Expect = 3.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 260 LCVLFSCRCFERSVRTVRAQRLQ 192
LC+LF C+ R++ A RL+
Sbjct: 268 LCLLFMKECYSRTITEQEAARLR 290
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 24.2 bits (50), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 47 SNNRVLVRLARALSIFKNITTCTKYITR*QPCNTTHLNLHTDSR 178
S + V +A+ALSIFK ++ T P +T LHTD +
Sbjct: 317 STSDVSGMVAQALSIFKQVSKTT------APDKSTPKELHTDEK 354
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 3.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 96 KILPRVLNTLLGNNLAIRRILTCTQTLGPGK 188
K+L R+L TLL ++ + +C Q+L G+
Sbjct: 200 KLLNRILFTLLNSDSLVNTSASCLQSLLDGE 230
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 23.8 bits (49), Expect = 4.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 177 GPGKCLKALSAYRSDRALETSARKQN 254
G G C LS Y D +L S ++QN
Sbjct: 413 GGGACEMELSKYLRDYSLTISGKQQN 438
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 23.8 bits (49), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 207 RSTPSNIFPGRESVCRLRCVVLQGCYRVMYLVH 109
RS P G S+ +CV+L C R++ H
Sbjct: 189 RSNPKGRADGELSIFARQCVLLSPCLRMLPKEH 221
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 4.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 129 GNNLAIRRILTCTQTLGPGKCLKALSAYRSDRALETSARKQNAQFNLTE 275
G++LAIRR+ + + K ++RS A SA AQ N+++
Sbjct: 99 GDHLAIRRVDGASNVTQDYRKAKTKRSFRSVSAPSLSALATQAQRNVSK 147
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.4 bits (48), Expect = 6.3
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +2
Query: 17 HEGDACARRHSNNRVLVRLARALSIFKNITTCTKYITR*QPCNTTHLNLHTDSRPGK 187
++ D + H + + + SIF + C YI+ QP + ++ R GK
Sbjct: 838 NDNDVFLKLHWSKSAIKKYETKASIFNELLFCLVYISAGQPARAQEM-VYWTLRNGK 893
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 6.3
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +2
Query: 17 HEGDACARRHSNNRVLVRLARALSIFKNITTCTKYITR*QPCNTTHLNLHTDSRPGK 187
++ D + H + + + SIF + C YI+ QP + ++ R GK
Sbjct: 838 NDNDVFLKLHWSKSAIKKYETKASIFNELLFCLVYISAGQPARAQEM-VYWTLRNGK 893
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 23.0 bits (47), Expect = 8.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 39 GAILIIVCLCASHAHY 86
G+ L+ C+C S+ HY
Sbjct: 306 GSSLVTCCICQSNYHY 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,128
Number of Sequences: 5004
Number of extensions: 18982
Number of successful extensions: 64
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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