Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D12
(283 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065892-1|BAC06108.1| 347|Homo sapiens seven transmembrane hel... 28 6.3
BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sortin... 27 8.4
BX784396-1|CAI19413.1| 2270|Homo sapiens vacuolar protein sortin... 27 8.4
BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sortin... 27 8.4
BX784395-1|CAI19411.1| 2270|Homo sapiens vacuolar protein sortin... 27 8.4
BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sortin... 27 8.4
BX682532-1|CAI23590.1| 2270|Homo sapiens vacuolar protein sortin... 27 8.4
BX641035-1|CAE46021.1| 1571|Homo sapiens hypothetical protein pr... 27 8.4
BC106952-1|AAI06953.1| 216|Homo sapiens hypothetical protein LO... 27 8.4
BC106951-1|AAI06952.1| 216|Homo sapiens hypothetical protein LO... 27 8.4
BC028115-1|AAH28115.1| 1412|Homo sapiens VPS13D protein protein. 27 8.4
AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sortin... 27 8.4
AL109757-1|CAI22115.1| 2270|Homo sapiens vacuolar protein sortin... 27 8.4
AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sortin... 27 8.4
AL031296-1|CAI23163.1| 2270|Homo sapiens vacuolar protein sortin... 27 8.4
AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sortin... 27 8.4
AL031276-1|CAI19222.1| 2270|Homo sapiens vacuolar protein sortin... 27 8.4
AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein. 27 8.4
AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein. 27 8.4
AB007922-1|BAA32298.3| 3209|Homo sapiens KIAA0453 protein protein. 27 8.4
>AB065892-1|BAC06108.1| 347|Homo sapiens seven transmembrane helix
receptor protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 99 ILPRVLNTLLGNNLAIRRILTCTQTLGP 182
+LP L TLLGN L I +L+C++ P
Sbjct: 30 LLPTFLLTLLGNLLIISTVLSCSRLHTP 57
>BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3122 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3163
>BX784396-1|CAI19413.1| 2270|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 2270
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3122 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3163
>BX784395-1|CAI19411.1| 2270|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 2270
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3122 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3163
>BX682532-1|CAI23590.1| 2270|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 2270
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>BX641035-1|CAE46021.1| 1571|Homo sapiens hypothetical protein
protein.
Length = 1571
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>BC106952-1|AAI06953.1| 216|Homo sapiens hypothetical protein
LOC283129 protein.
Length = 216
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 62 LVRLARALSIFKNITTCTKYITR*QPCNTTHLNLHTDSRPGKM 190
L+ L I T C ++ PC+TTHL+L ++ P +
Sbjct: 174 LISLMSRNKILSGDTACQGELSH--PCSTTHLHLRSEQPPASL 214
>BC106951-1|AAI06952.1| 216|Homo sapiens hypothetical protein
LOC283129 protein.
Length = 216
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 62 LVRLARALSIFKNITTCTKYITR*QPCNTTHLNLHTDSRPGKM 190
L+ L I T C ++ PC+TTHL+L ++ P +
Sbjct: 174 LISLMSRNKILSGDTACQGELSH--PCSTTHLHLRSEQPPASL 214
>BC028115-1|AAH28115.1| 1412|Homo sapiens VPS13D protein protein.
Length = 1412
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 147 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 188
>AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3122 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3163
>AL109757-1|CAI22115.1| 2270|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 2270
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3122 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3163
>AL031296-1|CAI23163.1| 2270|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 2270
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3122 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3163
>AL031276-1|CAI19222.1| 2270|Homo sapiens vacuolar protein sorting 13
homolog D (S. cerevisiae) protein.
Length = 2270
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1005 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1046
>AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein.
Length = 4363
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3098 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3139
>AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein.
Length = 4388
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 3123 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 3164
>AB007922-1|BAA32298.3| 3209|Homo sapiens KIAA0453 protein protein.
Length = 3209
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 241 ADVSSARSERYALNAFKHFPGPRVCVQVKMRRIARLLPSNVFS 113
A++SS++ E ++++ K R CV +K +PSN+FS
Sbjct: 1944 AEISSSKRECHSMDTEKS-RFFRFCVAIKKENYPDYMPSNIFS 1985
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,590,670
Number of Sequences: 237096
Number of extensions: 702022
Number of successful extensions: 1793
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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