Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D12
         (283 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   2.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   2.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 89  IFKNITTCTKYI 124
           IF NITTCT  I
Sbjct: 55  IFGNITTCTVII 66


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 110 CTKYITR*QPCNTTHLNLHTDSRP 181
           C K  TR     T H+ LHT  +P
Sbjct: 15  CHKRFTRDHHLKT-HMRLHTGEKP 37


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 12  FGTRAMRALGAILIIVCLCASHA 80
           FG +A+   G  +I  C C + A
Sbjct: 299 FGNKALLTPGVTMIPACTCKAVA 321


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 3   LQEFGTRAMRALGAILIIVCLCASHAHYQ 89
           L    T  M A    LI   LC S  H+Q
Sbjct: 276 LDSRSTERMIAASVNLICHILCMSDLHWQ 304


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -1

Query: 262 NCAFCFLADVSSARSERYALNAFKHFPGPRVC 167
           +C   + ADV         +  FKH  G   C
Sbjct: 248 HCKPGYQADVEKQECTECPIGKFKHEAGSHSC 279


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 152 HLNLHTDSRPGK 187
           H+ +HT  RP K
Sbjct: 166 HMRIHTGERPHK 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,584
Number of Sequences: 438
Number of extensions: 1417
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)