Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D10
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 63 9e-12
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 29 0.17
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 29 0.17
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces... 25 1.6
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 25 2.1
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 25 2.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 24 4.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 24 4.9
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 24 4.9
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 23 8.5
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 23 8.5
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 62.9 bits (146), Expect = 9e-12
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 152 RFPNQNQTRYCYQSYLDCHRCQKVRGKKYDPCCYFQRVYRSMCP 283
RFPN NQT++C+QSY+D RC K +G+ + PC F Y+S+CP
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCP 63
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 28.7 bits (61), Expect = 0.17
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 EFEEKALFTLSKM-PEMIKSAADIKTAPFDPRFPNQNQTR 178
+ + L+TLSK P ++K + D APF+ N N R
Sbjct: 43 DIDTSVLYTLSKRKPALVKRSTDASYAPFNVTCSNDNLLR 82
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 28.7 bits (61), Expect = 0.17
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 EFEEKALFTLSKM-PEMIKSAADIKTAPFDPRFPNQNQTR 178
+ + L+TLSK P ++K + D APF+ N N R
Sbjct: 43 DIDTSVLYTLSKRKPALVKRSTDASYAPFNVTCSNDNLLR 82
>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 182 CYQSYLDCHRCQKVRGKKYD 241
C S L C RC +V GK Y+
Sbjct: 72 CVYSELSCTRCNEVIGKVYN 91
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 175 EVLLSELFRLPSMPEGPRQEVRPVL 249
EVL L RLP + + P +E+ P+L
Sbjct: 51 EVLNLFLTRLPLLAQAPEKELEPIL 75
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 131 KTAPFDPRFPNQNQTRYCYQSYL---DCHRCQKVR 226
K PF+P F N + R + L +C CQKVR
Sbjct: 199 KKRPFEPEFLNDDVIRGNKRKALPAYECPDCQKVR 233
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 23.8 bits (49), Expect = 4.9
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 215 QKVRGKKYDPCCYFQRVYRSMC 280
+ +R KK++ C F +++ MC
Sbjct: 187 ESIRAKKFELECSFDPLFKKMC 208
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 145 RPKVP*PKPDEVLLSELFRLPSMPEGPRQEVRPVLLFPA 261
RP+ P P + L E F ++ E V + +FP+
Sbjct: 424 RPRTPSPSAENYLTQENFDSDNLSESLDNSVENLTVFPS 462
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 113 KSAADIKTAPFDPRFPNQNQTRYCYQSYLDCHRCQKVRG-KKYDP 244
++ ++ +++ DP P + + C +Y + +K+RG KKY P
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKP 227
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 80 LFTLSKMPEMIKSAADIK 133
++TL K PE + ADIK
Sbjct: 329 IYTLDKSPERLLKLADIK 346
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 71 EKALFTLSKMPEMIKSAADIKTAPFDPRF 157
EK L++ PE+++ D+KT R+
Sbjct: 297 EKMAGKLTRDPELVQKGEDLKTGHHSERY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,124,705
Number of Sequences: 5004
Number of extensions: 19098
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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