Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D10
(285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 65 9e-12
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 31 0.10
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 31 0.10
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 31 0.10
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 28 1.2
Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical pr... 27 2.2
U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical p... 26 5.0
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z73428-3|CAA97809.1| 247|Caenorhabditis elegans Hypothetical pr... 25 6.6
X96636-1|CAA65441.1| 263|Caenorhabditis elegans vab-7 protein. 25 6.6
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 25 8.7
AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isofor... 25 8.7
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 25 8.7
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 25 8.7
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 25 8.7
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 25 8.7
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 64.9 bits (151), Expect = 9e-12
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +2
Query: 137 APFDPRFPNQNQTRYCYQSYLDCHRCQKVRGKKYDPCCYFQRVYRSMCP 283
AP+D RFP + R C+ Y+D HRC ++ G+ Y PC +FQ VY+ CP
Sbjct: 51 APYDARFPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCP 99
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 31.5 bits (68), Expect = 0.10
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +2
Query: 86 TLSKMPEM--IKSAADIKTAPFDP---RFPNQNQTRYCYQ---SYLDCHR-CQ-KVRGKK 235
T+ P+M I D K +DP + N ++CYQ S CH C K G
Sbjct: 173 TIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDKCWGSG 232
Query: 236 YDPCCYFQRVYRSMCP 283
+ C QRVYRS+CP
Sbjct: 233 DNDC---QRVYRSVCP 245
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 31.5 bits (68), Expect = 0.10
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +2
Query: 86 TLSKMPEM--IKSAADIKTAPFDP---RFPNQNQTRYCYQ---SYLDCHR-CQ-KVRGKK 235
T+ P+M I D K +DP + N ++CYQ S CH C K G
Sbjct: 173 TIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDKCWGSG 232
Query: 236 YDPCCYFQRVYRSMCP 283
+ C QRVYRS+CP
Sbjct: 233 DNDC---QRVYRSVCP 245
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 31.5 bits (68), Expect = 0.10
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +2
Query: 86 TLSKMPEM--IKSAADIKTAPFDP---RFPNQNQTRYCYQ---SYLDCHR-CQ-KVRGKK 235
T+ P+M I D K +DP + N ++CYQ S CH C K G
Sbjct: 224 TIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDKCWGSG 283
Query: 236 YDPCCYFQRVYRSMCP 283
+ C QRVYRS+CP
Sbjct: 284 DNDC---QRVYRSVCP 296
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 71 EKALFTLSKMPEMIKSAADIKTAPFDPRFPNQNQTRYCYQSYLDCHRCQKVRGKKYD 241
+K + + + EM+ D + +D R+PN ++T + +L C CQ K D
Sbjct: 408 KKIMVQILPIHEMLLKEIDKVCSNWDSRYPNMSKTIGTFADFLKC--CQPFLDNKAD 462
>Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical
protein T16G1.2 protein.
Length = 407
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 205 PSMPEGPRQEVRPVLLFPA 261
P++ EGP+ EV P L+FP+
Sbjct: 25 PALLEGPQNEVVPSLIFPS 43
>U80030-13|AAG24169.1| 831|Caenorhabditis elegans Hypothetical
protein K12D9.12 protein.
Length = 831
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 161 NQNQTRYCYQSYLDCHRCQKVRGKKYD-PCCYFQRV 265
N+ +CY +YLD + K+ G K D C F V
Sbjct: 495 NEKLEIFCYTNYLDHYMNMKIFGNKRDCDGCQFGEV 530
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 47 IFHWIEFEEKALFTLSKMPEMIKSAADIK 133
I HW+E + K LF++++ E+ +K
Sbjct: 169 ILHWMETDHKELFSITEDGELSDETKKVK 197
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 47 IFHWIEFEEKALFTLSKMPEMIKSAADIK 133
I HW+E + K LF++++ E+ +K
Sbjct: 169 ILHWMETDHKELFSITEDGELSDETKKVK 197
>Z73428-3|CAA97809.1| 247|Caenorhabditis elegans Hypothetical
protein M142.4 protein.
Length = 247
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 65 FEEKALFTLSKMPEMIKSAADIKTAPFDPRFPNQN 169
F+ ++L ++K+P +++ A + + F P F Q+
Sbjct: 4 FDIESLIGVNKVPSLVEMVAASRASSFSPPFEQQH 38
>X96636-1|CAA65441.1| 263|Caenorhabditis elegans vab-7 protein.
Length = 263
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 65 FEEKALFTLSKMPEMIKSAADIKTAPFDPRFPNQN 169
F+ ++L ++K+P +++ A + + F P F Q+
Sbjct: 20 FDIESLIGVNKVPSLVEMVAASRASSFSPPFEQQH 54
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 163 PKPDEVLLSELFRLPSMPEGPRQEVRPVLL 252
PK +E L+ ELF + S EGP + V ++L
Sbjct: 224 PK-NEDLVKELFGIASQVEGPDRSVAEIVL 252
>AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isoform 3
protein.
Length = 769
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 163 PKPDEVLLSELFRLPSMPEGPRQEVRPVLL 252
PK +E L+ ELF + S EGP + V ++L
Sbjct: 180 PK-NEDLVKELFGIASQVEGPDRSVAEIVL 208
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 163 PKPDEVLLSELFRLPSMPEGPRQEVRPVLL 252
PK +E L+ ELF + S EGP + V ++L
Sbjct: 224 PK-NEDLVKELFGIASQVEGPDRSVAEIVL 252
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 163 PKPDEVLLSELFRLPSMPEGPRQEVRPVLL 252
PK +E L+ ELF + S EGP + V ++L
Sbjct: 224 PK-NEDLVKELFGIASQVEGPDRSVAEIVL 252
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 163 PKPDEVLLSELFRLPSMPEGPRQEVRPVLL 252
PK +E L+ ELF + S EGP + V ++L
Sbjct: 266 PK-NEDLVKELFGIASQVEGPDRSVAEIVL 294
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 163 PKPDEVLLSELFRLPSMPEGPRQEVRPVLL 252
PK +E L+ ELF + S EGP + V ++L
Sbjct: 224 PK-NEDLVKELFGIASQVEGPDRSVAEIVL 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,329,883
Number of Sequences: 27780
Number of extensions: 108855
Number of successful extensions: 301
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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