Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D08
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0676 + 18574651-18575283 27 2.1
02_03_0208 - 16434936-16435018,16435393-16435540 27 2.1
05_04_0280 - 19752112-19752451,19754104-19755587 27 2.8
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 27 2.8
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 26 3.7
12_02_1226 - 27182423-27182768,27182855-27183765 26 4.8
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593 26 4.8
05_03_0580 + 15730927-15731271,15731353-15731937 26 4.8
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 26 4.8
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 4.8
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 25 6.4
01_01_0366 + 2871188-2871655 25 6.4
01_01_0364 - 2856598-2857059 25 6.4
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 25 6.4
01_01_0360 - 2837046-2837507 25 6.4
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532... 25 8.5
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 25 8.5
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 25 8.5
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397... 25 8.5
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 25 8.5
01_01_0529 + 3874865-3876285,3876352-3876367 25 8.5
>04_03_0676 + 18574651-18575283
Length = 210
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 167 KESPIKKSPTKKTEVPASNGKENGREE 247
K +K+P +T++ + G+E GREE
Sbjct: 106 KNPEARKNPPYQTKITRATGREGGREE 132
>02_03_0208 - 16434936-16435018,16435393-16435540
Length = 76
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 140 PEEVTSTEVKESPIKKSPTKKTEVPASNGKEN 235
P+ T+ E P+ SP T+ P+SNG+ +
Sbjct: 12 PQATTAANASEGPLL-SPPSATKAPSSNGRHH 42
>05_04_0280 - 19752112-19752451,19754104-19755587
Length = 607
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 242 LCRSLYHCSQVL 207
LCRSLYHC V+
Sbjct: 421 LCRSLYHCKMVM 432
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 140 PEEVTSTEVKESPIKKSPTKKTEVPASNG 226
P +V + E+P+ K+PT K E P G
Sbjct: 200 PPKVNAVATHEAPLSKAPTDKGEEPPIAG 228
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 122 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
EK+D EE E K+ +K K+ E NG E +E
Sbjct: 252 EKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKE 292
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 113 AAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNG 226
AAV+K + P V +P P+ K PA+ G
Sbjct: 170 AAVQKDNCVPPAAPKPAVPATPSTSPPSNKEYAPAAPG 207
>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
Length = 129
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 162 KSRNLQLRNLPPKKLKY 212
K R + R+LPPKK+KY
Sbjct: 5 KERAAESRSLPPKKVKY 21
>05_03_0580 + 15730927-15731271,15731353-15731937
Length = 309
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 187 FLNWRFLDFRGSHLFGCGVLLF 122
F NW F+ F GS + G VL++
Sbjct: 187 FFNWYFIFFYGSAVLGSTVLVY 208
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
D ++EK P E ++ ++ E I++ + TEVP E E
Sbjct: 234 DESIEKPADEPIEKSADQITERSIEQPAERVTEVPIQEPTERVTE 278
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 140 PEEVTSTEVKESPIKKSPTKKTEVPASNGKENG 238
P EV E + SP KS E +S KENG
Sbjct: 1165 PSEVVDDEDQRSPPPKSDHSLIEKESSEVKENG 1197
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 104 MADAAVEKQDAAPE---EVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
M D A +D P E + K P KK P+K E P + N E
Sbjct: 64 MGDCAEGDKDYIPPKEGETAPRQSKRQPKKKVPSKDDEAPTNTTGSNKSE 113
>01_01_0366 + 2871188-2871655
Length = 155
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 104 MADAAVEKQDA---APEEVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
MA A +K A A EE + + +++P K P + +PA G++ E
Sbjct: 1 MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGE 50
>01_01_0364 - 2856598-2857059
Length = 153
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 104 MADAAVEKQDA---APEEVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
MA A +K A A EE + + +++P K P + +PA G++ E
Sbjct: 1 MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGE 50
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 104 MADAAVEKQDA---APEEVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
MA A +K A A EE + + +++P K P + +PA G++ E
Sbjct: 538 MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGE 587
>01_01_0360 - 2837046-2837507
Length = 153
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 104 MADAAVEKQDA---APEEVTSTEVKESPIKKSPTKKTEVPASNGKENGRE 244
MA A +K A A EE + + +++P K P + +PA G++ E
Sbjct: 1 MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGE 50
>08_02_0236 +
14652034-14652225,14652311-14652527,14652561-14653208,
14653374-14654364,14654532-14654703
Length = 739
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 146 EVTSTEVKESPIKKSPTKKTEVPAS 220
E K P KK P+K EVPA+
Sbjct: 65 ETAPRRSKRQPKKKDPSKDDEVPAN 89
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 131 DAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGREEV 250
D++ E TS E ESP K + PAS+ K+ G+++V
Sbjct: 231 DSSMEPSTSLEHSESPPPKRKSLDGRTPASSTKK-GKKKV 269
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 113 AAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPAS 220
+ + ++D V STE K KSP KK AS
Sbjct: 238 SVLPEKDVISSSVKSTEAKNKVRNKSPAKKNVRSAS 273
>03_01_0530 +
3971990-3972331,3972415-3972489,3972608-3972661,
3972747-3972825,3972927-3973054,3973178-3973261,
3973344-3973427,3973518-3973669,3973810-3973960,
3974675-3974746,3975708-3975749
Length = 420
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 246 SSLPFSLPLLAGTSVFLVGDFLIGDSLT--SVEVTSSGAASCFSTAASA 106
S+LP PLLAG+++ L L+ LT SS AS S+++ A
Sbjct: 6 STLPALRPLLAGSTLLLNARPLLRSRLTRRPFRAVSSSTASPSSSSSGA 54
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 146 EVTSTEVKESPIKKSPTKKTEVPA-SNGKEN 235
E T K P KK P+K +VPA + G +N
Sbjct: 81 ETTPWRSKRQPKKKVPSKDDDVPANTTGTKN 111
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 182 KKSPTKKTEVPASNGK 229
K +PTK+TE+P +G+
Sbjct: 37 KPTPTKETEIPGGHGR 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,936,349
Number of Sequences: 37544
Number of extensions: 88607
Number of successful extensions: 356
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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