Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D08
(250 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein. 34 0.096
EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein. 34 0.096
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 34 0.096
AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD... 34 0.096
BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A pr... 33 0.22
BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A (5... 33 0.22
BC004937-1|AAH04937.1| 174|Homo sapiens NOL5A protein protein. 33 0.22
AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A (5... 33 0.22
Y12065-1|CAA72789.1| 602|Homo sapiens hNop56 protein. 32 0.29
EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein. 30 1.6
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 29 3.6
AY354203-1|AAQ63888.1| 1013|Homo sapiens RAN-binding protein 2-l... 28 6.3
AJ277892-6|CAD12460.1| 454|Homo sapiens Titin fetal Isoform pro... 28 6.3
AF321609-1|AAT09768.1| 834|Homo sapiens titin protein. 28 6.3
>Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein.
Length = 916
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPASNGKENGREEV 250
+ADA VEK + A V + V+E SP+ KSP + K+ VP S +E G+ V
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 656
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGREE 247
+AA EK++ E K+SP+K + + E +E G+EE
Sbjct: 490 EAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEE 535
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTK---KTEVPASNGKENGREEV 250
+ A +++ A +V E +SP+ KSP + K+ VP S +E G+ V
Sbjct: 594 EVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 643
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 VEKQDAAPEEVTSTEVK-ESPIKKSPTKKTEVPASNGKENGREE 247
VE++ +P + E K +SP+ KSP ++ + A GK +EE
Sbjct: 661 VEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEE 704
>EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein.
Length = 916
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPASNGKENGREEV 250
+ADA VEK + A V + V+E SP+ KSP + K+ VP S +E G+ V
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 656
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGREE 247
+AA EK++ E K+SP+K + + E +E G+EE
Sbjct: 490 EAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEE 535
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTK---KTEVPASNGKENGREEV 250
+ A +++ A +V E +SP+ KSP + K+ VP S +E G+ V
Sbjct: 594 EVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 643
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 VEKQDAAPEEVTSTEVK-ESPIKKSPTKKTEVPASNGKENGREE 247
VE++ +P + E K +SP+ KSP ++ + A GK +EE
Sbjct: 661 VEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEE 704
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPASNGKENGREEV 250
+ADA VEK + A V + V+E SP+ KSP + K+ VP S +E G+ V
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 656
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGREE 247
+AA EK++ E K+SP+K + + E +E G+EE
Sbjct: 490 EAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEE 535
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTK---KTEVPASNGKENGREEV 250
+ A +++ A +V E +SP+ KSP + K+ VP S +E G+ V
Sbjct: 594 EVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 643
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 VEKQDAAPEEVTSTEVK-ESPIKKSPTKKTEVPASNGKENGREE 247
VE++ +P + E K +SP+ KSP ++ + A GK +EE
Sbjct: 661 VEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEE 704
>AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD
medium) protein.
Length = 260
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPASNGKENGREEV 250
+ADA VEK + A V + V+E SP+ KSP + K+ VP S +E G+ V
Sbjct: 165 VADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 219
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGREE 247
+AA EK++ E K+SP+K + + E +E G+EE
Sbjct: 53 EAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEE 98
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTK---KTEVPASNGKENGREEV 250
+ A +++ A +V E +SP+ KSP + K+ VP S +E G+ V
Sbjct: 157 EVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 206
>BC104793-1|AAI04794.1| 594|Homo sapiens nucleolar protein 5A
protein.
Length = 594
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKEN 235
+A A+ E + PEE E+ E P KK K EVP NG E+
Sbjct: 457 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMED 498
>BC104791-1|AAI04792.1| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKEN 235
+A A+ E + PEE E+ E P KK K EVP NG E+
Sbjct: 457 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMED 498
>BC004937-1|AAH04937.1| 174|Homo sapiens NOL5A protein protein.
Length = 174
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKEN 235
+A A+ E + PEE E+ E P KK K EVP NG E+
Sbjct: 37 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMED 78
>AL049712-4|CAC01444.2| 594|Homo sapiens nucleolar protein 5A
(56kDa with KKE/D repeat) protein.
Length = 594
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKEN 235
+A A+ E + PEE E+ E P KK K EVP NG E+
Sbjct: 457 LALASSENSSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMED 498
>Y12065-1|CAA72789.1| 602|Homo sapiens hNop56 protein.
Length = 602
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKEN 235
+A A+ E + PEE T E P KK K EVP NG E+
Sbjct: 465 LALASSENSSSTPEECEETS--EKPKKKKKQKPQEVPQENGMED 506
>EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein.
Length = 877
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +2
Query: 104 MADAAVEKQDAAPEEVTSTEVKE---SPIKKSPTK---KTEVPASNGKE 232
+ADA VEK + A V + V+E SP+ KSP + K+ VP S +E
Sbjct: 602 VADAKVEKPEKAKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEE 650
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPASNGKENGREE 247
+AA EK++ E K+SP+K + + E +E G+EE
Sbjct: 490 EAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEE 535
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 VEKQDAAPEEVTSTEVK-ESPIKKSPTKKTEVPASNGKENGREE 247
VE++ +P + E K +SP+ KSP ++ + A GK +EE
Sbjct: 622 VEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEE 665
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 107 ADAAVEKQDAAPEEVTSTEVKESPIKKSP---TKKTEVPASNGKENGREEV 250
A+ E + AAP +VT K P KK+P KK E+P E +E V
Sbjct: 11606 AEVVEEPEPAAPPQVTVPPKKPVPEKKAPAVVAKKPELPPVKVPEVPKEVV 11656
>AY354203-1|AAQ63888.1| 1013|Homo sapiens RAN-binding protein 2-like
1 short isoform protein.
Length = 1013
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 125 KQDAAPEEVTSTEVKESPIKKSPTKK 202
++DA + V+S+ V +SP+ SP +K
Sbjct: 504 REDALDDNVSSSSVHDSPLASSPVRK 529
>AJ277892-6|CAD12460.1| 454|Homo sapiens Titin fetal Isoform
protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +2
Query: 107 ADAAVEKQDAAPE----EVTSTEVKESPIKKSPTKKTEVPASNGKENGREEV 250
A AV K+ AP E V E I K+P KK E PA E +E V
Sbjct: 385 ASVAVPKKPEAPRAKVPEAAQEVVPEKKIPKAPIKKPEAPAVTVPEVPQEIV 436
>AF321609-1|AAT09768.1| 834|Homo sapiens titin protein.
Length = 834
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +2
Query: 107 ADAAVEKQDAAPE----EVTSTEVKESPIKKSPTKKTEVPASNGKENGREEV 250
A AV K+ AP E V E I K+P KK E PA E +E V
Sbjct: 551 ASVAVPKKPEAPRAKVPEAAQEVVPEKKIPKAPIKKPEAPAITVPEVPQEIV 602
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 107 ADAAVEKQDAAPE----EVTSTEVKESPIKKSPTKKTEVPA 217
A AV K+ AP E V E I K+P KK E PA
Sbjct: 748 ASVAVPKKPEAPRAKVPEAAQEVVPEKKIPKAPIKKPEAPA 788
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,326,055
Number of Sequences: 237096
Number of extensions: 510226
Number of successful extensions: 1754
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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