Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D07
         (231 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   2.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   3.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   3.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    19   9.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 203  IFWKIKSSSFSPSQRV 156
            I WKIK   F+ S ++
Sbjct: 1338 ITWKIKGVQFTTSDKI 1353


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 149 AN*LLNFCYVI*CISLNVCSLL 84
           AN  ++F Y+I C+S +V   L
Sbjct: 537 ANVAISFGYLISCVSRSVSMAL 558


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 149 AN*LLNFCYVI*CISLNVCSLL 84
           AN  ++F Y+I C+S +V   L
Sbjct: 537 ANVAISFGYLISCVSRSVSMAL 558


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 18.6 bits (36), Expect = 9.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 62  LEFCFFFLIKNRHLM 106
           L FC  F+  N HL+
Sbjct: 180 LLFCCAFIFFNMHLL 194


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,664
Number of Sequences: 336
Number of extensions: 670
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3213870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)