Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D07
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    29   0.062
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   0.77 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   0.77 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    23   4.1  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    22   9.5  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    22   9.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    22   9.5  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    22   9.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    22   9.5  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 29.5 bits (63), Expect = 0.062
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 129 KVKQSVRFWNALR--WTE*ARLYLPKDSSI 212
           KVK+  R +NA+R  W E  R  +PKD SI
Sbjct: 27  KVKRRKRLFNAIRKLWNERRRYRMPKDESI 56


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 QKLSSQFASGTRCDGLNELDFIFQKILQFAE 219
           Q LSS + +  +   L ELDF  Q++  F E
Sbjct: 39  QALSSSYEAEEKAKQLKELDFRLQQLSSFCE 69


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 113 CISLNVCSLLKKKNKTRD*FSLSPRAELFQ 24
           C+S  +  L K K K+   FS++PR E+ Q
Sbjct: 745 CVSHCIAKLQKTKLKSLTDFSVNPRVEVVQ 774


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 136 SSQFASGTRCDGLNELDFIFQKILQF 213
           SS+   G  C G+NEL+   +++L++
Sbjct: 531 SSKLKKGILCGGMNELNEPVREVLEW 556


>SPCC1795.03 |gms1||UDP-galactose transporter
          Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 72 QNSRLVLSLSSCRIIP 25
          QNS L+L+L+  RI+P
Sbjct: 26 QNSALILTLNYSRIMP 41


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 14  IPRAGIIRHEERERTS 61
           +PR    RH+ERER S
Sbjct: 244 LPRRDYNRHDERERYS 259


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 125 NKS*AVSSLLERVAMD*MSSTLSSKRFFNSLSNS 226
           + S A++S  E  A D +SST++   F  S SNS
Sbjct: 864 SSSFALASNSESGASDVLSSTIAKPTFKFSTSNS 897


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 191 IKSSSFSPSQRVPEAN*LLNFCYV 120
           I + +FSPS +   A  L NFC V
Sbjct: 66  IMTCAFSPSTKSIAAGGLNNFCVV 89


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 197 WKIKSSSFSPSQRVPEAN*LLNFC 126
           W +KSSS   S R+ ++  + N C
Sbjct: 564 WLVKSSSLDNSFRIRDSENVRNAC 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,614
Number of Sequences: 5004
Number of extensions: 11753
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)