Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D07
         (231 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221...    28   1.2  

>02_01_0325 -
           2208480-2208674,2208772-2210609,2210980-2211109,
           2211231-2211270,2211409-2211531,2211940-2212030,
           2212396-2212480,2212565-2212720,2212797-2212853,
           2212940-2213110,2213313-2213330,2213479-2213551,
           2213754-2213839,2214348-2214466,2214542-2214641
          Length = 1093

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 10  VDPPGWNNSARGEREN 57
           +DP GW+ SA GER N
Sbjct: 371 LDPVGWDESAAGERRN 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,014,787
Number of Sequences: 37544
Number of extensions: 65705
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)