Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D07
         (231 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical p...    25   5.5  
AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical ...    25   5.5  
AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z92829-11|CAE17737.1|  257|Caenorhabditis elegans Hypothetical p...    25   9.5  

>U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical
           protein C37C3.10 protein.
          Length = 123

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 227 VNYSAN*RIFWKIKSSSFSPSQRVPEA 147
           VN+     IF++++SSS+S S RVP A
Sbjct: 65  VNFQPGTNIFFQLESSSYS-SMRVPVA 90


>AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical
           protein T07D3.4 protein.
          Length = 409

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 126 TKVKQSVRFWNALRWTE*ARLYLPKDSS 209
           T +KQ   FW   ++ +  +L +P+D S
Sbjct: 155 TNIKQFTEFWKRSKFIDCLKLEVPRDKS 182


>AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical
           protein F56F4.4 protein.
          Length = 228

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 169 HRNAFQKRTDCLTFVMLYSVFH*MSVL 89
           H N  QKR DC  FV  + + + +S L
Sbjct: 27  HNNYSQKRLDCYDFVRSFDLMYSVSQL 53


>Z92829-11|CAE17737.1|  257|Caenorhabditis elegans Hypothetical
           protein F10A3.16 protein.
          Length = 257

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = -2

Query: 137 LNFCYVI*CISLNVCSLL-----KKKNKTRD 60
           ++FC +I C S  +CS L     KK+ +T D
Sbjct: 156 ISFCSIIVCFSATLCSKLCWLSIKKRTETMD 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,460,519
Number of Sequences: 27780
Number of extensions: 62919
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)