Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D07
         (231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   2.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   4.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   8.0  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 104 LNVCSLLKKKNK 69
           +N C LLKK+N+
Sbjct: 9   INSCDLLKKRNE 20


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 104 LNVCSLLKKKNK 69
           +N C LLKK+N+
Sbjct: 130 INSCDLLKKRNE 141


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 106 EIHYIT*QKLSSQFASGTRC 165
           E+H I+ +KLS     G++C
Sbjct: 265 EMHQISKKKLSPATPKGSKC 284


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 79  FFNKEQTFNEIHYIT*QKLSSQFASGTRC 165
           F N +  FNE+++       +     TRC
Sbjct: 555 FINNDYNFNEVNFRILGANVNDLIMNTRC 583


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 104 LNVCSLLKKKNK 69
           +N C LLKK+++
Sbjct: 9   INSCDLLKKRSE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,036
Number of Sequences: 438
Number of extensions: 751
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)