Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D06
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    33   0.008
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    31   0.041
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   0.38 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    27   0.89 
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   2.7  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   2.7  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    25   2.7  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    24   4.7  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    24   4.7  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   6.3  

>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 25/67 (37%), Positives = 31/67 (46%)
 Frame = +3

Query: 75  LNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVGYRHID 254
           L NG +IP+IG GTW                      G D  K   A+  A+  GYRHID
Sbjct: 17  LPNGDKIPSIGLGTWRS--------------------GKDETK--NAVCAALKAGYRHID 54

Query: 255 TAHLYAH 275
           TAH+Y +
Sbjct: 55  TAHIYGN 61


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 31.1 bits (67), Expect = 0.041
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 48  AQIKIPTVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYA 227
           +Q +  TV L NGM IP IG+G ++                        + +    ++ A
Sbjct: 4   SQTESTTVTLTNGMVIPRIGFGAFM----------------------LKYNECYGLVTQA 41

Query: 228 IDVGYRHIDTAHLYAH 275
           +D GYRHIDTA +Y +
Sbjct: 42  LDSGYRHIDTAAVYGN 57


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 69  VKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVGYRH 248
           VKLNNG++ P   YG+++                       +  K  +++  A+  GYRH
Sbjct: 6   VKLNNGLKCPQFAYGSYM----------------------VNRTKCFDSVYAALQCGYRH 43

Query: 249 IDTAHLY 269
           ID+A +Y
Sbjct: 44  IDSAQMY 50


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 AMSYAIDVGYRHIDTAHLYAH 275
           A+  A+  GYRHID A +Y +
Sbjct: 42  AVKTALQYGYRHIDAAAIYGN 62


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 279 FHARRDAPYRCAGSRHRSRTTWPQPSSGNQFHRIRTKMVCPDHYLFV 139
           FH     P+   G  +   T W Q   GNQ+   R  ++     LF+
Sbjct: 86  FHWVTGTPFEFNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFL 132


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 12  VSHTSQHSKVIMAQIKIPTVKLNNGMEIP 98
           +SH+S  S+    ++KIP V+     EIP
Sbjct: 206 ISHSSSSSRKSSTELKIPPVETRIVAEIP 234


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 170 KWFVRITIFLCLFANSEPGSVADCWDFHPIVELDCWY 60
           K +V  +++ CLF N   GS  D  D    V   C +
Sbjct: 416 KHYVYASLYACLFCNLNEGSPKDYLDNDIYVHARCLF 452


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 209  NHLREISSIEFERKWFVRITIFLCLFANSEPGSVAD 102
            N +R+  S+     W + I +FLC ++N +     D
Sbjct: 1654 NEVRKAFSVS---NWAISILVFLCAYSNEQQTQAVD 1686


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 144 KDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVGY---RHIDTAHL 266
           K + PD   SF++   D P +++  S    +GY   RH++ A +
Sbjct: 279 KTTMPDDHSSFQYRLADIPGIIKGASDGKGLGYDFLRHVERAKM 322


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 183 DGTDFPKMVEAMSYAIDVGYRHIDTAHLYAHG 278
           +G D       +  A D+G    DTA +Y++G
Sbjct: 39  EGYDVEHTKNCLKQAWDLGINTFDTAEIYSNG 70


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 192 DFPKMVEAMSYAIDVGYRHIDTAHLYAHG 278
           D  ++ + M  A D G R  DTA+ Y+ G
Sbjct: 42  DEEEVFKIMKAAYDAGIRTFDTANCYSAG 70


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 159 DKPFSFEFDGTDFPKMVEAMSYAIDVGYRHIDTAH 263
           D PF     G    K  E + Y  D+GYRH D  H
Sbjct: 319 DAPFHSLAAGLFLSK--EQVHYFRDLGYRHSDIHH 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,034
Number of Sequences: 5004
Number of extensions: 25699
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)