Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_D06
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90... 35 0.015
10_01_0066 + 848523-849269,849520-849741 33 0.047
10_01_0065 + 845447-846187,846969-847193 33 0.062
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 31 0.14
04_04_0032 + 22291469-22291818,22292438-22292681,22292873-222930... 31 0.25
04_01_0350 - 4610444-4610668,4612181-4612969 30 0.33
01_06_1336 + 36396904-36397014,36397141-36397191,36397681-363977... 30 0.33
11_06_0701 + 26407055-26407597,26407794-26409644 29 0.77
04_04_0034 + 22298636-22298952,22299057-22299300,22299395-222995... 28 1.3
01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119... 28 1.3
04_04_0930 - 29480700-29480853,29481007-29483036 28 1.8
01_06_1337 + 36404245-36404355,36404467-36404517,36405304-364053... 28 1.8
07_03_0541 + 19254455-19254666,19255053-19255207,19255420-192554... 27 2.3
05_05_0085 - 22265143-22265226,22265294-22265602,22266915-222671... 27 2.3
04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355... 27 2.3
04_04_0033 + 22295974-22296290,22296441-22296684,22296797-222969... 27 2.3
01_03_0082 - 12280109-12281068 27 2.3
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 3.1
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 3.1
03_05_0755 - 27462388-27463140 27 3.1
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532... 27 4.1
03_05_0689 + 26771769-26771993 27 4.1
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 26 5.4
12_01_1007 - 10208034-10208165,10208376-10208480,10208612-102086... 26 7.1
03_02_0297 + 7196624-7196931,7198015-7198258,7198385-7198573,719... 26 7.1
01_06_1620 + 38697960-38698131,38698532-38700732 26 7.1
02_05_0281 + 27441661-27441846,27442919-27443067,27445599-27445737 25 9.4
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 25 9.4
>10_01_0070 +
902999-903354,904354-904600,904718-904897,905087-905332
Length = 342
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 171 SFEFDGTDFPKMV-EAMSYAIDVGYRHIDTAHLYAHGTRSRYG 296
SF D P V +A+ AID GYRH DTA A+GT + G
Sbjct: 36 SFPLDAPQLPATVRDAVLRAIDAGYRHFDTA--AAYGTEAPLG 76
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 33.1 bits (72), Expect = 0.047
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 180 FDGTDFPKMVEAMSYAIDVGYRHIDTAHLYA 272
F T + A+ AI++GYRH DTA LYA
Sbjct: 28 FPFTSSEETTAALLRAIELGYRHFDTARLYA 58
>10_01_0065 + 845447-846187,846969-847193
Length = 321
Score = 32.7 bits (71), Expect = 0.062
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 180 FDGTDFPKMVEAMSYAIDVGYRHIDTAHLYA 272
F T AM AI++GYRH DTA +YA
Sbjct: 26 FPFTSSEDTTAAMLRAIELGYRHFDTARIYA 56
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 171 SFEFDGTDFPKMVEAMSYAIDVGYRHIDTAHLY 269
SF TD + + + AI+ GYRH DTA +Y
Sbjct: 21 SFPLGATDPSTVKDVVLRAIEAGYRHFDTAAVY 53
>04_04_0032 +
22291469-22291818,22292438-22292681,22292873-22293052,
22293843-22294070
Length = 333
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 213 AMSYAIDVGYRHIDTAHLY 269
A+ A++VGYRHIDTA +Y
Sbjct: 49 ALLAALEVGYRHIDTASVY 67
>04_01_0350 - 4610444-4610668,4612181-4612969
Length = 337
Score = 30.3 bits (65), Expect = 0.33
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +3
Query: 48 AQIKIPTVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYA 227
A +P V LN+G +P +G+GT G S T + +++A
Sbjct: 16 AATAVPCVTLNSGHAMPVLGFGT--GSS-------------------TPPADLAATIAHA 54
Query: 228 IDVGYRHIDTAHLYAHGTRSRYG 296
+ +GYRH+DTA +Y GT G
Sbjct: 55 VRLGYRHLDTAAVY--GTEGAVG 75
>01_06_1336 +
36396904-36397014,36397141-36397191,36397681-36397757,
36397876-36397963,36398616-36398891,36399002-36399250,
36400315-36400398
Length = 311
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 75 LNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVGYRHID 254
LN G +IP++G GTW SDP + +A+ A+ GYRHID
Sbjct: 7 LNTGAKIPSVGLGTW---------QSDPG-------------VVGDAVYAAVKAGYRHID 44
Query: 255 TAHLY 269
A +Y
Sbjct: 45 CARMY 49
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = -3
Query: 305 SLTTIPTSGSMRVEMRRIDVPVADIDRVRHGLNHLREISSIE 180
SL ++PT+ + +RR+D+ I++V G+ L+ ++ +E
Sbjct: 484 SLHSLPTAITQLYNLRRLDIVETPINQVPKGIGRLKFLNDLE 525
>04_04_0034 +
22298636-22298952,22299057-22299300,22299395-22299574,
22300819-22300842,22301055-22301285
Length = 331
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 225 AIDVGYRHIDTAHLYAHGTRSRYG 296
A++VG+RH DTA LY GT + G
Sbjct: 42 ALEVGFRHFDTAALY--GTEAPLG 63
>01_06_1338 +
36411536-36411646,36411738-36411791,36411898-36411974,
36412108-36412195,36412289-36412561,36412651-36412968
Length = 306
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 MVEAMSYAIDVGYRHIDTAHLY 269
+ + +S A+ GYRHID A LY
Sbjct: 28 VADVVSAAVKAGYRHIDCAPLY 49
>04_04_0930 - 29480700-29480853,29481007-29483036
Length = 727
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 75 LNNGMEIPAIGYGTWLGISEQAQKDSDP-DKPFSFEFD 185
L N E+P G WLGI + D DP ++ + EFD
Sbjct: 115 LTNNPELPTDSSGQWLGICNN-RTDGDPKNRIVAVEFD 151
>01_06_1337 +
36404245-36404355,36404467-36404517,36405304-36405337,
36405428-36405485,36405499-36405586,36406110-36406385,
36406505-36406753,36407558-36407641
Length = 316
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 75 LNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVGYRHID 254
LN G +IP++G GTW SDP + A+ A+ GYRHID
Sbjct: 7 LNTGAKIPSVGLGTW---------QSDPG-------------VVGNAVYAAVKAGYRHID 44
Query: 255 TAHLY 269
A Y
Sbjct: 45 CASAY 49
>07_03_0541 +
19254455-19254666,19255053-19255207,19255420-19255496,
19255572-19255679
Length = 183
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 269 VEMRRIDVPVADIDRVRHGLNHLREISSIEFERKWF 162
V+++++ A+I +RH HLR S IE E+K +
Sbjct: 48 VDLQQVAALKAEIQEIRHETQHLR--SGIEVEKKGY 81
>05_05_0085 -
22265143-22265226,22265294-22265602,22266915-22267187,
22267413-22267500,22267620-22267696,22267791-22267841,
22267967-22268077
Length = 330
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 75 LNNGMEIPAIGYGTW 119
LN G +IP++G GTW
Sbjct: 7 LNTGAKIPSVGLGTW 21
>04_04_0151 +
23134467-23134627,23134657-23134803,23135413-23135512,
23135554-23135638,23135767-23136419
Length = 381
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 202 RWLRPCRTRSMSATGTSIRRISTRMEPEVGMV 297
RWLRP R S S+RRI R P +V
Sbjct: 255 RWLRPPRRSSSPVPPLSLRRILRRPRPTPELV 286
>04_04_0033 +
22295974-22296290,22296441-22296684,22296797-22296976,
22297749-22297979
Length = 323
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 210 EAMSYAIDVGYRHIDTAHLY 269
+A+ A++ G+RH DTA LY
Sbjct: 37 DAVLAALEAGFRHFDTASLY 56
>01_03_0082 - 12280109-12281068
Length = 319
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 218 VVRDRCRLPAHRYGASLRAWNQKS 289
V+R RC + +H +G L WN S
Sbjct: 9 VLRRRCDVVSHHHGGELTVWNPAS 32
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 70 SSSTMGWKSQQSATEPGSELANRHKKIVIRTNHFRSNSMELISRRWLRP 216
SSS W++ + P SE +R K + N R E +R +L P
Sbjct: 167 SSSAWDWENFYPPSPPDSEFFDRRKADLEEANRLRELEEEEKARGYLHP 215
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 224 RDRCRLPAHRYGASLRAWNQKSVWS 298
R R L A RY SLR ++Q+ VW+
Sbjct: 1813 RRRAALRAARYQQSLRRYHQRHVWA 1837
>03_05_0755 - 27462388-27463140
Length = 250
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 178 NSMELISRRWLRPCRTRSMSATGTSIRRISTRMEPEVG 291
++ EL R RPC SA S+RR+ + E G
Sbjct: 130 SAQELAGRLARRPCPPAGRSAAAPSVRRVHSAQELAAG 167
>05_05_0196 +
23152389-23152658,23153042-23153092,23153167-23153240,
23153356-23153443,23153541-23153738,23153824-23153895,
23154034-23154093,23154194-23154370,23154975-23155064
Length = 359
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 75 LNNGMEIPAIGYGTWLGISEQA 140
L +G IPA+G GTW S+ A
Sbjct: 16 LKSGHAIPAVGLGTWRAGSDTA 37
>03_05_0689 + 26771769-26771993
Length = 74
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 315 LDF---LVDDHTDFWFHARRDAPYRCAGSRHRSRTTWPQPSS 199
LDF ++DD DF FHA + + ++H RT+ P P S
Sbjct: 35 LDFTANVLDDDDDFLFHAAEEPEWSHYEAKH--RTSIPPPPS 74
>03_02_0569 -
9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 42 IMAQIKIPTVKLNNG--MEIPAIGYGTWLGISEQAQKDSDPDKPFS 173
++A ++P++K + M++P + I Q+ K+S+PD P S
Sbjct: 734 LVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPIS 779
>12_01_1007 -
10208034-10208165,10208376-10208480,10208612-10208673,
10210820-10211456
Length = 311
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 133 SLIPSQVP*PIAGISIPLLSLTVGILI 53
+L+P VP P+A I + ++L++ + +
Sbjct: 230 TLVPGSVPRPVARIGVTFVALSIALFL 256
>03_02_0297 +
7196624-7196931,7198015-7198258,7198385-7198573,
7198650-7198874
Length = 321
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 213 AMSYAIDVGYRHIDTAHLY 269
A+ AI+ GYRH DTA Y
Sbjct: 35 AVLKAIEAGYRHFDTAAHY 53
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 114 TWLGISEQAQKDSDPDKPFSFEFDGTD 194
T+ G+ E + +SDP+ ++F+F D
Sbjct: 227 TYTGVPELSPTNSDPNSAYTFQFVDND 253
>02_05_0281 + 27441661-27441846,27442919-27443067,27445599-27445737
Length = 157
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 291 TDFWFHARRDAPYRCAGSRHRSRTTWPQPSSGNQFHRIRTKMV 163
T +FH ++ P+ + + T W Q +G Q R R +V
Sbjct: 64 TYHFFHWKKGTPFADDQGMYNTLTWWEQMDNGKQLTRNRKFLV 106
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +1
Query: 55 LKYQQSSSTMGWKSQQSATEPGSELANRHKKIVIRTNHFRS-NSMELISRRWLRPCRTRS 231
L Y S G + ATE ++ +N H+ ++ H + +E+ ++ +
Sbjct: 807 LSYSSGSDIAGDSGKADATEVSTDHSNHHQDTILDEEHRKKLRQIEIAVMQYRESLEEKG 866
Query: 232 MSATGTSIRRIST---RMEPEVGM 294
+ T +++++ R++ E G+
Sbjct: 867 LRNTEEIEKKVASHRRRLQSEYGL 890
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,934,963
Number of Sequences: 37544
Number of extensions: 171568
Number of successful extensions: 566
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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