Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D06
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110482-2|CAB60335.1|  316|Caenorhabditis elegans Hypothetical ...    37   0.003
AL110482-1|CAB54385.1|  316|Caenorhabditis elegans Hypothetical ...    37   0.003
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    35   0.014
AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical ...    35   0.014
U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical pr...    33   0.033
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    33   0.057
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    32   0.076
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ...    31   0.23 
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    25   0.34 
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas...    28   1.6  
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ...    28   1.6  
Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   2.8  
Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z30317-3|CAA82969.1|  930|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    26   6.6  
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    25   8.7  

>AL110482-2|CAB60335.1|  316|Caenorhabditis elegans Hypothetical
           protein Y39G8B.1b protein.
          Length = 316

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 25/70 (35%), Positives = 34/70 (48%)
 Frame = +3

Query: 60  IPTVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVG 239
           + ++KLN+G  IPAIG GTW              KP           ++  A+  A+  G
Sbjct: 2   VQSLKLNSGYSIPAIGLGTW------------QSKP----------GEVAAAIKTAVAAG 39

Query: 240 YRHIDTAHLY 269
           YRHID AH+Y
Sbjct: 40  YRHIDCAHVY 49


>AL110482-1|CAB54385.1|  316|Caenorhabditis elegans Hypothetical
           protein Y39G8B.1a protein.
          Length = 316

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 25/70 (35%), Positives = 34/70 (48%)
 Frame = +3

Query: 60  IPTVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVG 239
           + ++KLN+G  IPAIG GTW              KP           ++  A+  A+  G
Sbjct: 2   VQSLKLNSGYSIPAIGLGTW------------QSKP----------GEVAAAIKTAVAAG 39

Query: 240 YRHIDTAHLY 269
           YRHID AH+Y
Sbjct: 40  YRHIDCAHVY 49


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 60  IPTVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVG 239
           + ++ LN G ++P  G GTW  + ++A+                    +  A+  A+D G
Sbjct: 3   VDSIPLNTGAQLPLFGLGTWQ-VKDEAE--------------------LTVALRAALDAG 41

Query: 240 YRHIDTAHLY 269
           YR IDTAHLY
Sbjct: 42  YRLIDTAHLY 51


>AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical
           protein Y39G8B.2 protein.
          Length = 339

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 66  TVKLNNGMEIPAIGYGTW 119
           TV LN+G E+P IGYGTW
Sbjct: 6   TVTLNSGYEMPVIGYGTW 23


>U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical
           protein C07D8.6 protein.
          Length = 317

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +3

Query: 66  TVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDVGYR 245
           ++KL+NG+E+P IG GTW          S P              +++ A+  A+  GYR
Sbjct: 7   SIKLSNGVEMPVIGLGTW---------QSSP-------------AEVITAVKTAVKAGYR 44

Query: 246 HIDTAHLY 269
            IDTA +Y
Sbjct: 45  LIDTASVY 52


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 173  RKWFVRITIFLCLFANSEPGSVAD 102
            RKW+  + IFLC F   EPG +AD
Sbjct: 1353 RKWYNYLWIFLCKFTLREPGEMAD 1376


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +3

Query: 57  KIPTVKLNNGMEIPAIGYGTWLGISEQAQKDSDPDKPFSFEFDGTDFPKMVEAMSYAIDV 236
           K+P   L+NG+ +P+IG GTW    E+ +                        +  A+  
Sbjct: 4   KVPIFTLSNGVLMPSIGLGTWQMTGEEGK----------------------TVIRNAVLA 41

Query: 237 GYRHIDTAHLY 269
           GYRHIDTA LY
Sbjct: 42  GYRHIDTATLY 52


>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
           protein T01A4.1a protein.
          Length = 1217

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = +1

Query: 46  WHRLKYQQSSSTMGWKSQ-QSATEPGSELANRHKKIVIRTNH--FRSNSMELISRRWLRP 216
           W R K +Q  + M WK + +      S+  N  KK   R NH  +   S  L+       
Sbjct: 491 WRRYKLEQELAAMSWKIRWEELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSS 550

Query: 217 CRTRSMSATGTSIRRISTRMEPEVGMVVNEK 309
             +   S++  + R+IS  ++ ++ +   +K
Sbjct: 551 VNSDKRSSSSGTTRKISAMIDRKLSIFTRKK 581


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 24.6 bits (51), Expect(2) = 0.34
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 72  KLNNGMEIPAIGYGTWLGISEQ 137
           KL NG EIP +  GT+    +Q
Sbjct: 3   KLKNGQEIPKLALGTYEAKGDQ 24



 Score = 24.2 bits (50), Expect(2) = 0.34
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 201 KMVEAMSYAIDVGYRHIDTAHLY 269
           ++  A+  A+ VGYR  DTA  Y
Sbjct: 24  QLFAAVDEALKVGYRSFDTAKYY 46


>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1276

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 46  WHRLKYQQSSSTMGWKSQ-QSATEPGSELANRHKKIVIRTNH 168
           W R K +Q  + M WK + +      S+  N  KK   R NH
Sbjct: 537 WRRYKLEQELAAMSWKIRWEELDGEESQKKNEKKKAKKRKNH 578


>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
           protein T01A4.1c protein.
          Length = 1276

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 46  WHRLKYQQSSSTMGWKSQ-QSATEPGSELANRHKKIVIRTNH 168
           W R K +Q  + M WK + +      S+  N  KK   R NH
Sbjct: 537 WRRYKLEQELAAMSWKIRWEELDGEESQKKNEKKKAKKRKNH 578


>Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical
           protein F53F1.3 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 66  TVKLNNGMEIPAIGYGTWLGISEQ 137
           ++KLN G + P IG GT+  I +Q
Sbjct: 2   SIKLNTGYDCPLIGLGTYKIIGDQ 25


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 254 IDVPVADIDRVRHGLNHLREISSIEFERK 168
           +D    D DR+RH LNH  +I   E ER+
Sbjct: 266 LDQKTIDADRLRHNLNHREKIKE-EAERQ 293


>U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical
           protein ZK1290.5 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 60  IPTVKLNNGMEIPAIGYGT 116
           IPT  L+N +E+P IG GT
Sbjct: 2   IPTTVLSNNVEMPLIGLGT 20


>U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical
           protein R05G6.10 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 245 PVADIDRVRHGLNHLREISSIEFERKWFVRITIFLCL 135
           P+++I R  H  N    ISSI F  +WF R++ F  +
Sbjct: 229 PLSEIGR--HSKNKEGTISSISFYIEWFNRLSAFAAI 263


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 112 P*PIAGISIPLLSLTVGILICAII 41
           P P+ GI++PL+++ +G+L  AI+
Sbjct: 117 PPPVKGINVPLVAIILGLLSRAIM 140


>Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical
           protein F53F1.2 protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 72  KLNNGMEIPAIGYGTW 119
           KLN+G  IP +G+GT+
Sbjct: 14  KLNSGYNIPFVGFGTY 29


>Z30317-3|CAA82969.1|  930|Caenorhabditis elegans Hypothetical
           protein T16G12.6 protein.
          Length = 930

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  SQQSATEPGSELANRHKKIVIRTNHFRSNSMELISRR 204
           SQQ+  EPG +   RH++   + N F +    L +++
Sbjct: 603 SQQNINEPGIDDQTRHRRYAFQINTFSALFASLTNKK 639


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 DKPFSFEFDGTDFPKMVEAMSYAIDVGYRHIDTAH 263
           +K    E DG +     E + +A+DV +RH+   H
Sbjct: 207 EKTVMIELDGRE--SSAEHLEHALDVAFRHVAKLH 239


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 270 RRDAPYRCAGSRHRSRTTWPQPSSGNQFHRIRTK 169
           RRD+P R   SR RSR+  P+     +  R R++
Sbjct: 149 RRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSR 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,248
Number of Sequences: 27780
Number of extensions: 146808
Number of successful extensions: 502
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)