Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D04
         (292 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9AW32 Cluster: TATA box-binding protein-associated fac...    31   3.7  
UniRef50_Q8TT20 Cluster: Sensory transduction histidine kinase; ...    31   4.9  
UniRef50_UPI0000DB6CC7 Cluster: PREDICTED: similar to krotzkopf ...    30   8.5  
UniRef50_UPI00015A5C1B Cluster: UPI00015A5C1B related cluster; n...    30   8.5  
UniRef50_Q1VKU0 Cluster: Metallophosphoesterase; n=1; Psychrofle...    30   8.5  

>UniRef50_Q9AW32 Cluster: TATA box-binding protein-associated factor
           chain TAFII 90; n=1; Guillardia theta|Rep: TATA
           box-binding protein-associated factor chain TAFII 90 -
           Guillardia theta (Cryptomonas phi)
          Length = 469

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = -3

Query: 173 VERIRMFAAIKRK----LLLTILN--NLSDVLFLNLEVHNNIKLIVFRLVIFLINVIFEY 12
           ++ IR+ +  K K     ++TI    N+  + F+N+++ +N++ I+F+L     N +  Y
Sbjct: 19  LKSIRLISFYKNKKSKNFIMTIQEYLNVLKIYFINIKISSNLRAIIFKLSYIKKNFVLNY 78

Query: 11  F 9
           F
Sbjct: 79  F 79


>UniRef50_Q8TT20 Cluster: Sensory transduction histidine kinase;
           n=4; Methanosarcina|Rep: Sensory transduction histidine
           kinase - Methanosarcina acetivorans
          Length = 674

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -3

Query: 242 FKLSREYMSLLI*SCQILATRVVVE--RIRMFAAIKRKLLLTILNNLSDVLFLNLEVHNN 69
           FK+  EYM   I  C +L   +  +    ++F  +   ++LTI   LS  L+ +++   N
Sbjct: 187 FKILSEYMVSFILLCSLLLLYITRDGFETKVFRLLAASIILTIFGELSFALYTHVDELPN 246

Query: 68  IKLIVFRLVIFLI 30
           +    F+L+ F +
Sbjct: 247 LIGHYFKLLSFYL 259


>UniRef50_UPI0000DB6CC7 Cluster: PREDICTED: similar to krotzkopf
           verkehrt CG2666-PA, isoform A; n=1; Apis mellifera|Rep:
           PREDICTED: similar to krotzkopf verkehrt CG2666-PA,
           isoform A - Apis mellifera
          Length = 1257

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 191 LATRVVVERIRMFAAIKRKLLLTILNNLSDVLFLNLEVHNNIK--LIVFRLVIFLI 30
           L T   +  I +F  ++R+      N + D LFLN+ ++NNI+  LI +R+  +L+
Sbjct: 291 LVTPGTIFLIIIFCVLRREDACAFHNIIPDYLFLNMPIYNNIREFLINWRVWCWLM 346


>UniRef50_UPI00015A5C1B Cluster: UPI00015A5C1B related cluster; n=1;
           Danio rerio|Rep: UPI00015A5C1B UniRef100 entry - Danio
           rerio
          Length = 289

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 194 ILATRVVVERIRMFAAIKRKLLLTILNNLSDVLFLNLEVHNNIKLIVFRLVIFLI 30
           + A  +V E I +F  +     + +  + SD LF+NL  H+ I LI    + FL+
Sbjct: 54  LFACSLVCECIHLFVCLFIHSFVCLFIHSSDCLFVNLFTHSFICLISHSFISFLV 108


>UniRef50_Q1VKU0 Cluster: Metallophosphoesterase; n=1;
          Psychroflexus torquis ATCC 700755|Rep:
          Metallophosphoesterase - Psychroflexus torquis ATCC
          700755
          Length = 348

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 89 NLEVHNNIKLIVFRLVIFLINVIFEYFP 6
          NL+++ NI  I+F +++FLI  +F  FP
Sbjct: 6  NLKMNKNIYRILFYVILFLITYLFYIFP 33


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,996,652
Number of Sequences: 1657284
Number of extensions: 4446546
Number of successful extensions: 11460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11455
length of database: 575,637,011
effective HSP length: 74
effective length of database: 452,997,995
effective search space used: 9965955890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)