Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D04
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    28   0.24 
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   2.2  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   3.0  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   6.9  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    23   9.1  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 146 IKRKLLLTILNNLSDVLFLNLEVHN 72
           I R LLL I NN+  + +L+ + HN
Sbjct: 312 ISRSLLLAISNNIGQIAYLHAQKHN 336


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 119 LNNLSDVLFLNLEVHNNIKLIVFRLVIFLINVIFEYFPR 3
           LN LS  L  +L  H     I+F    +LIN + EY P+
Sbjct: 77  LNALSSAL--SLPTHIRSTAILFFKRFYLINSVMEYSPK 113


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 119 LNNLSDVLFLNLEVHNNIKLI-VFRLVIFL 33
           LN +SD+ FLN E+  + KL  V + + FL
Sbjct: 295 LNAISDIPFLNYELITSTKLAKVLKRIAFL 324


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 146 IKRKLLLTILNNLSDVLFLNLEVHNNIKLIVFRLV 42
           I   +L+++LN +S  +FLN  +  N   +V  LV
Sbjct: 140 IMASVLISVLNYISQKIFLNGLILGNSHNVVTSLV 174


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 200 CQILATRVVVERIRMFA 150
           C++LA RV+V R+R  A
Sbjct: 818 CKVLAIRVLVNRLRAAA 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,397
Number of Sequences: 5004
Number of extensions: 19119
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)