Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D04
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    27   2.5  
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894...    26   5.8  
08_02_0707 - 20212190-20214592                                         25   7.7  
01_04_0140 + 16572497-16572528,16572958-16573063,16573509-165735...    25   7.7  
01_01_0392 - 3024830-3025390                                           25   7.7  

>04_04_0961 + 29715938-29716034,29716918-29717133,29717438-29717776,
            29718247-29719274,29719465-29719551,29719636-29720043,
            29720394-29720558,29720742-29721036,29721131-29721345,
            29721838-29722143,29722474-29722537,29722644-29722883,
            29722959-29723062
          Length = 1187

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 290  KGYQNGTNLGLAVT*VFKLSREYMSLLI*SCQILATRVVVERIRMFAAIKRKLLLTI 120
            +G+ N +  GLAVT    L+ +  S++   C      + VERI  ++ I  +  L +
Sbjct: 873  EGFINPSIAGLAVTYALNLNSQLASIIWNICNTENKMISVERILQYSRIPSEAPLVV 929


>02_05_0402 +
           28687597-28687671,28688123-28688235,28688927-28689432,
           28689544-28689717,28689953-28690082,28692241-28692772,
           28693578-28693823,28694648-28695061
          Length = 729

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 162 NSLYDNACSEYLTGLYQQRHVFAREFEHSGDGQA 263
           ++L D+  S  +   YQ +H   R  E +GD +A
Sbjct: 589 DALQDDLTSTLVQQCYQSQHTIQRMIETAGDNEA 622


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 144 NRRKHTNSLYDNACSEYLTGLYQQRHVFAREFEHS 248
           N   H NSL +N+C E  +  +   H      +HS
Sbjct: 560 NEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHS 594


>01_04_0140 +
           16572497-16572528,16572958-16573063,16573509-16573567,
           16573615-16573681,16573964-16573989,16574787-16574913,
           16576542-16576609,16577223-16577329,16577837-16577902,
           16579332-16579438
          Length = 254

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 97  NTSDKLFNIVNNNLRLIAANIRIL 168
           NT D+ F  + NN+RL+   +R++
Sbjct: 42  NTEDQRFQSIANNMRLVDLKLRMV 65


>01_01_0392 - 3024830-3025390
          Length = 186

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 191 LATRVVVERIRMFAAIKR-KLLLTILNNLSDVLFLNLEVHNNIKLIVFRLVIFLINVIFE 15
           LA  ++ +     AA  R + +L  L   S  L   + V N  KL+VF  VI +  +  +
Sbjct: 40  LAAPLLADNAAAAAARDRIQRVLGALGEASSDLAFAMSVMNGAKLLVFSDVIGIEQLGDQ 99

Query: 14  YFP 6
           YFP
Sbjct: 100 YFP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,775,244
Number of Sequences: 37544
Number of extensions: 107142
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)