Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D04
         (292 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   2.3  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    21   9.4  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    21   9.4  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 276 WHEPRLGRHLSVQTLS 229
           WH+PR+ R    Q L+
Sbjct: 354 WHDPRIPRDFDTQNLT 369


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 TNSLYDNACSEYLTGLYQ 212
           +N   DNA +EYL+  YQ
Sbjct: 68  SNRHNDNATAEYLSCYYQ 85


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -3

Query: 203 SCQILATRVVVERIRMFAAIKRKLLLTILNNLSDVLFLNLEVHNNIKLIVFRLV 42
           SC+ +  +++ ++ R  AA++R    +  ++L +      E  NN +   FRL+
Sbjct: 700 SCRTIIEQLLDQQRRKVAALERYAAASREHDLLEQRIRLFEERNNDREANFRLL 753


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,572
Number of Sequences: 2352
Number of extensions: 5279
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 17819379
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)