Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D01
         (216 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I2I8 Cluster: Putative uncharacterized protein PFI159...    30   8.9  
UniRef50_A0EGQ6 Cluster: Chromosome undetermined scaffold_95, wh...    30   8.9  

>UniRef50_Q8I2I8 Cluster: Putative uncharacterized protein PFI1590c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFI1590c - Plasmodium falciparum (isolate 3D7)
          Length = 1342

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 152 LSLRILGYVMVCDKNTSYVFSYEFNYF---VKYKITLKLIYCFRKNNIIIN 9
           ++L+I+  ++   KN  YV  Y+       ++Y +TL  IY F K N   N
Sbjct: 355 IALKIIRKIIKKYKNNDYVSKYDLKIILTHIEYPVTLYFIYLFNKLNEYTN 405


>UniRef50_A0EGQ6 Cluster: Chromosome undetermined scaffold_95, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_95,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2826

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 125 MVCDKNTSYVFSYEFNYFVKYKITLKLIYCFR 30
           ++CD+ T+Y      NY+ KY ITL    C +
Sbjct: 846 IICDQTTTYCKQCPLNYYKKYIITLPSKLCLQ 877


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,145,151
Number of Sequences: 1657284
Number of extensions: 2477635
Number of successful extensions: 5508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5508
length of database: 575,637,011
effective HSP length: 50
effective length of database: 492,772,811
effective search space used: 10348229031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)