Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D01
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   0.34 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   2.4  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    23   5.5  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    23   7.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    22   9.6  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 143 RILGYV-MVCDKNTS----YVFSYEFNYFVKYKITLKLIYCFRKNNIIIN 9
           R L Y+  V +KNT      +FS   +  ++Y  T+  I+C +K NI IN
Sbjct: 140 RALAYINQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPIN 189


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 23 YSYENNRLILV 55
          YSYENNRL L+
Sbjct: 40 YSYENNRLCLI 50


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 180 ARGVLIVRSTQLKNPWLR 127
           A+ ++  + T LK+PWLR
Sbjct: 426 AKDLINTKDTVLKDPWLR 443


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 79  LNSYENT*DVFLSQTMT*PRILKLSTANYQNTSCVRTHIIFE 204
           LNS +   D  L Q+   PR   +S     + S VR+H   E
Sbjct: 656 LNSSKRVSDRVLYQSSATPRSTDVSPTRPDSISSVRSHTAVE 697


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 82  NSYENT*DVFLSQTMT*PRILKLSTANYQNTS 177
           NSY NT  + ++ T+     L + T +Y N S
Sbjct: 128 NSYSNTNSLPITDTINGTTELIIPTTSYNNQS 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,820
Number of Sequences: 5004
Number of extensions: 11222
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)