Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D01
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    26   4.8  
07_01_1106 - 10187609-10190041,10190292-10191932                       25   6.3  

>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 145 KLSTANYQNTSCVRTHIIFEHVKI 216
           ++  +N QN  C+RT I+F ++K+
Sbjct: 176 QIEWSNLQNQHCLRTLILFGNIKL 199


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 99  VRCIFIANHDVAKDS*AEYCELSKHLL--RTYAYNF 200
           ++C+ ++NH   KD    + +L +HL   R + YN+
Sbjct: 504 LKCLTLSNHTDIKDFPYSFTDLKRHLYLSRWWKYNW 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,219,902
Number of Sequences: 37544
Number of extensions: 53202
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)