Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D01
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    26   4.2  
U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF016681-19|AAO91735.1|  204|Caenorhabditis elegans Hypothetical...    25   9.7  
AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    25   9.7  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    25   9.7  
AC006730-8|AAO91687.1|  154|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 131 YVMVCDKNTSYVFSYEFNYFVKYKITLKLI 42
           +VMV  K  S  +S+ F+   +Y+ TLK +
Sbjct: 541 FVMVMLKMASKTYSHNFSALFRYQTTLKTV 570


>U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical
           protein F52E4.1a protein.
          Length = 536

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 165 IVRSTQLKNPWLRHG 121
           ++ S +LKNPW +HG
Sbjct: 518 MLESKKLKNPWKKHG 532


>U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical
           protein F52E4.1b protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 165 IVRSTQLKNPWLRHG 121
           ++ S +LKNPW +HG
Sbjct: 504 MLESKKLKNPWKKHG 518


>AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical
           protein W02D3.4 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 104 SYVFSYEFNYFVKYKITLKLIYCFRKN 24
           SYVFS+ F  F+   I   +   FR+N
Sbjct: 237 SYVFSHYFGIFITSTIIFVIYSIFRRN 263


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -3

Query: 127 SWFAI-KIHLTYFHMNLII 74
           SW ++ K+HLTYF ++LI+
Sbjct: 198 SWASLSKLHLTYFIVSLIL 216


>AF016681-19|AAO91735.1|  204|Caenorhabditis elegans Hypothetical
           protein F22E5.20 protein.
          Length = 204

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 152 LSLRILGYVMVCDKNTS 102
           L +++LGY M C+ NT+
Sbjct: 57  LKIKLLGYAMKCELNTN 73


>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 161 FAVLSLRILGYVMVCDKNTSYVFSYEFNYFVKYKITLKLIYCFRKN 24
           F VLS   L   +V  K+  Y+      Y VK K+   ++ CFRKN
Sbjct: 483 FLVLSALKLLQRVVTVKDDKYI-----RYIVKEKVLDPVMECFRKN 523


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform a protein.
          Length = 1085

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 161 FAVLSLRILGYVMVCDKNTSYVFSYEFNYFVKYKITLKLIYCFRKN 24
           F VLS   L   +V  K+  Y+      Y VK K+   ++ CFRKN
Sbjct: 719 FLVLSALKLLQRVVTVKDDKYI-----RYIVKEKVLDPVMECFRKN 759


>AC006730-8|AAO91687.1|  154|Caenorhabditis elegans Hypothetical
           protein Y27F2A.8 protein.
          Length = 154

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 152 LSLRILGYVMVCDKNTS 102
           L +++LGY M C+ NT+
Sbjct: 57  LKIKLLGYAMKCELNTN 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,203,083
Number of Sequences: 27780
Number of extensions: 60732
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)