Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_D01
         (216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   5.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   5.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   6.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   8.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 159 ELSKHLLRTYAYNF 200
           E  KH    Y YNF
Sbjct: 355 EAEKHAAMLYQYNF 368


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 108 IFIANHDVAKDS 143
           +F+ NHD  +D+
Sbjct: 303 VFVDNHDTQRDN 314


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 62  KITLKLIYCFRKNNII 15
           K + KL+ CF  NN++
Sbjct: 113 KKSSKLLQCFIDNNLM 128


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 142 LKLSTANYQNTSC 180
           + LST NY   +C
Sbjct: 200 IHLSTGNYSRLAC 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,466
Number of Sequences: 438
Number of extensions: 846
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)