Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C24
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   1.0  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    24   3.1  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.3  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    22   9.6  

>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 121 KSLQVKXTSSKRLNIKKEKKTRKLFFFILHY*LCARVFL 5
           + +Q +  S K++  K  ++ R+ +FF+L Y     +FL
Sbjct: 57  RKVQDRRESEKKVKGKGREEYRRYYFFLLFYVSFPHIFL 95


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 142 PIHNIYSKSLQVKXTSSKRLNIKKEKKT 59
           P    + K L+ K  + +R+N+K  KKT
Sbjct: 391 PSEEAFLKRLESKKIAVERINVKDGKKT 418


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 142 PIHNIYSKSLQVKXTSSKRLNIK 74
           PIH++    L++K T    +N+K
Sbjct: 327 PIHSVMVSPLKIKDTHEVLMNLK 349


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 124 SKSLQVKXTSSKRLNIKKEKK 62
           SKS+      S+ LN+KKE K
Sbjct: 93  SKSVPRSQRFSRELNVKKENK 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,886
Number of Sequences: 5004
Number of extensions: 4685
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)