Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C24
         (144 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    25   7.3  
AC084158-28|AAL27265.2|  322|Caenorhabditis elegans Hypothetical...    25   7.3  
AB275890-1|BAF34313.1|  322|Caenorhabditis elegans D-amino acid ...    25   7.3  

>Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical
           protein F16B12.1 protein.
          Length = 655

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 72  KKRRPENFFFLFYTTSYAPAFSS 4
           K RRPEN+F+ F   S+ P+F S
Sbjct: 87  KIRRPENYFYSFSEMSF-PSFVS 108


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
          receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 66 RRPENFFFLFYTTSY 22
          R+P NFFF F++ S+
Sbjct: 2  RKPHNFFFFFHSLSH 16


>AC084158-28|AAL27265.2|  322|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.5 protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 66  RRPENFFFLFYTTSY 22
           RRPE+ F +FYTT Y
Sbjct: 120 RRPEHKFGIFYTTWY 134


>AB275890-1|BAF34313.1|  322|Caenorhabditis elegans D-amino acid
           oxidase protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 66  RRPENFFFLFYTTSY 22
           RRPE+ F +FYTT Y
Sbjct: 120 RRPEHKFGIFYTTWY 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,547
Number of Sequences: 27780
Number of extensions: 25617
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)