Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C23
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 88 4e-19
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 87 7e-19
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 79 3e-16
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 30 0.16
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.1
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 27 1.1
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 27 1.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 2.6
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 2.6
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 25 4.5
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 7.9
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 88.2 bits (209), Expect = 4e-19
Identities = 45/102 (44%), Positives = 59/102 (57%)
Frame = +2
Query: 101 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEICERAEQYVKEYRIKERD 280
SK+ PES+ ++++A KKR+ I +RAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 281 EIRLARQARNRGNYYVPGEAKLAFVIRIRGGNQVSPKVRKVL 406
+I L R+AR GNYYVP E KL FVIRIRG N + PK RK++
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIM 111
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 87.4 bits (207), Expect = 7e-19
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = +2
Query: 122 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEICERAEQYVKEYRIKERDEIRLARQ 301
PES+ +++SA KKR+ I +RAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 302 ARNRGNYYVPGEAKLAFVIRIRGGNQVSPKVRKVL 406
AR GNY+VP E KL FV+RIRG N + PK RK++
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIM 110
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 79.0 bits (186), Expect = 3e-16
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +2
Query: 188 LKRRSASIKKRKEICERAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 367
+ ++ A K RKE +RAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96
Query: 368 GGNQVSPKVRKVL 406
G + PK+RKVL
Sbjct: 97 GVKNMPPKIRKVL 109
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.9 bits (64), Expect = 0.16
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 206 SIKKRKEICERAEQYVKEYRIKERDEIRLARQARNRGN 319
S+K+ +EI E+ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 233 ERAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 337
++A Q ++ + +RL N+ N+++PGE
Sbjct: 308 DKATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 197 RSASIKKRKEICERAEQYVKEYRIKERDEIRLARQARN 310
R S K ++E ER +QYV E E+D+I + + ++
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 203 ASIKKRKEICERAEQYVKEYRIKERDEIRLARQAR 307
+++KKR C RA QY E + RL R +
Sbjct: 5 STLKKRLAACNRASQYKLETSLNPMPTFRLLRNTK 39
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 191 KRRSASIKKRKEICERAEQYVKEYRIKERDEIRLARQARNRGN 319
KR A ++ K+ ER ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 54 KEGCGREKNL*RVKRTVRSCQLF 122
KE CGRE+ R KRT C F
Sbjct: 140 KEHCGRERAFLRKKRTKIQCSHF 162
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 141 CFKTDSGTAGNFLLSSLPFTGFFLGRS 61
C K D T G +L LPF G F GR+
Sbjct: 260 CLKPDLTTLGKYLGGGLPF-GAFGGRA 285
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 264 ASRSVMKSDWQDRLVTVAIIMCPVKLN*HLSSVFVVATKYHP 389
+S+ + + DWQD + ++I + + L S +A YHP
Sbjct: 1119 SSQKLTRDDWQDWIRRISIELLKESPSSALRSCSTLAGIYHP 1160
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 205 SGTPLECDLKTASSECLPPFTVLQ 134
S PLE DL+ +ECL P ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,799
Number of Sequences: 5004
Number of extensions: 31198
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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